Difference between revisions of "TSS:Hg 103723.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=NR_138480:0 ENST00000649087.1:-28 ENST00000648995.1:29 ENST00000650334.1:-89 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| Line 6: | Line 6: | ||
|distance_to_tss=-5 | |distance_to_tss=-5 | ||
|end=6737389 | |end=6737389 | ||
| + | |end_of_center_position=6737377 | ||
|entrez_id=108570035 | |entrez_id=108570035 | ||
|gc_percent=0.557214 | |gc_percent=0.557214 | ||
|gene_alias=- | |gene_alias=- | ||
| − | |gene_description=lncRNA in | + | |gene_description=lncRNA in non-homologous end joining pathway 1 |
| − | |gene_name=LINP1 | + | |gene_id=108570035 |
| + | |gene_name=lncRNA in non-homologous end joining pathway 1 | ||
| + | |gene_source=HGNC:53170 | ||
| + | |gene_symbol=LINP1 | ||
| + | |gene_synonyms= | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:53170 | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NR_138480 | |nearest_promoter_id=NR_138480 | ||
|nearest_refseq=NR_138480 | |nearest_refseq=NR_138480 | ||
|nearest_unigene=Hs.568834 | |nearest_unigene=Hs.568834 | ||
| − | |num_trans= | + | |num_trans=4 |
|species=human | |species=human | ||
|start=6737364 | |start=6737364 | ||
| + | |start_of_center_position=6737376 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=NR_138480.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103723.1 | |tss_id=hg_103723.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 18:54, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 6737376 |
|---|---|
| End of the center position in the TSS region: | 6737377 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NR_138480.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 4 |
| All_trans: | NR_138480:0 ENST00000649087.1:-28 ENST00000648995.1:29 ENST00000650334.1:-89 |
TATA-Box annotation
| Distance to TSS: | -5 |
|---|---|
| Nearest PromoterID: | NR_138480 |
| Entrez ID: | 108570035 |
| Nearest Unigene: | Hs.568834 |
| Nearest Refseq: | NR_138480 |
| Nearest Ensembl: | |
| Gene Name: | lncRNA in non-homologous end joining pathway 1 |
| Gene Alias: | - |
| Gene Description: | lncRNA in non-homologous end joining pathway 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.02 |
| GC%: | 0.557214 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
