Difference between revisions of "TSS:Hg 103746.1"
From referenceTSS
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000623134 | + | |all_trans=ENST00000623134.1:0 AK123101:0 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| Line 6: | Line 6: | ||
|distance_to_tss=-115 | |distance_to_tss=-115 | ||
|end=7411604 | |end=7411604 | ||
| + | |end_of_center_position=7411601 | ||
|entrez_id=57713 | |entrez_id=57713 | ||
|gc_percent=0.61194 | |gc_percent=0.61194 | ||
|gene_alias=- | |gene_alias=- | ||
| − | |gene_description=Scm | + | |gene_description=Scm like with four mbt domains 2 |
|gene_name=SFMBT2 | |gene_name=SFMBT2 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| Line 16: | Line 17: | ||
|nearest_refseq=NM_001018039 | |nearest_refseq=NM_001018039 | ||
|nearest_unigene=Hs.407983 | |nearest_unigene=Hs.407983 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=human | |species=human | ||
|start=7411597 | |start=7411597 | ||
| + | |start_of_center_position=7411600 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-34(GCTTAAATAGAG,+,0.00) |
| − | |transcript_name=ENST00000623134 | + | |transcript_name=ENST00000623134.1 AK123101 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103746.1 | |tss_id=hg_103746.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 17:34, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 7411600 |
|---|---|
| End of the center position in the TSS region: | 7411601 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000623134.1 AK123101 |
|---|---|
| Distance: | 0 |
| Num_trans: | 2 |
| All_trans: | ENST00000623134.1:0 AK123101:0 |
TATA-Box annotation
| Distance to TSS: | -115 |
|---|---|
| Nearest PromoterID: | NM_001029880 |
| Entrez ID: | 57713 |
| Nearest Unigene: | Hs.407983 |
| Nearest Refseq: | NM_001018039 |
| Nearest Ensembl: | ENSG00000198879 |
| Gene Name: | SFMBT2 |
| Gene Alias: | - |
| Gene Description: | Scm like with four mbt domains 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.61194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -34(GCTTAAATAGAG,+,0.00) |
