Difference between revisions of "TSS:Hg 103902.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:23728 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.195 | |cpg_percent=0.195 | ||
|distance=6 | |distance=6 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-30 |
|end=11823333 | |end=11823333 | ||
| + | |end_of_center_position=11823326 | ||
|entrez_id=254427 | |entrez_id=254427 | ||
|gc_percent=0.79602 | |gc_percent=0.79602 | ||
| Line 21: | Line 22: | ||
|nearest_refseq=NM_153256 | |nearest_refseq=NM_153256 | ||
|nearest_unigene=Hs.435775 | |nearest_unigene=Hs.435775 | ||
| − | |num_trans= | + | |num_trans=254427 |
|species=human | |species=human | ||
|start=11823318 | |start=11823318 | ||
| + | |start_of_center_position=11823325 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-77(GGCCCTTTAAGC,-,0.00),-75(CCCTTTAAGCGC,+,0.00) |
| − | |transcript_name=ENST00000474155 | + | |transcript_name=ENST00000474155.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103902.1 | |tss_id=hg_103902.1 | ||
Latest revision as of 18:58, 19 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 11823325 |
|---|---|
| End of the center position in the TSS region: | 11823326 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000474155.1 |
|---|---|
| Distance: | 6 |
| Num_trans: | 254427 |
| All_trans: | HGNC:23728 |
TATA-Box annotation
| Distance to TSS: | -30 |
|---|---|
| Nearest PromoterID: | NM_153256 |
| Entrez ID: | 254427 |
| Nearest Unigene: | Hs.435775 |
| Nearest Refseq: | NM_153256 |
| Nearest Ensembl: | ENSG00000148426 |
| Gene Name: | proline and serine rich 2 |
| Gene Alias: | C10orf47 |
| Gene Description: | proline and serine rich 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.195 |
| GC%: | 0.79602 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -77(GGCCCTTTAAGC,-,0.00),-75(CCCTTTAAGCGC,+,0.00) |
