Difference between revisions of "TSS:Hg 103940.1"
From referenceTSS
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| Line 6: | Line 6: | ||
|NRP= | |NRP= | ||
|TFIIIA-INTP= | |TFIIIA-INTP= | ||
| − | |all_trans= | + | |all_trans=HGNC:17142 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
|distance=-54 | |distance=-54 | ||
| − | |distance_to_tss= | + | |distance_to_tss=9030 |
|end=13109210 | |end=13109210 | ||
| + | |end_of_center_position=13109194 | ||
|entrez_id=10133 | |entrez_id=10133 | ||
|gc_percent=0.562189 | |gc_percent=0.562189 | ||
| − | |gene_alias=ALS12 | + | |gene_alias=ALS12{{!}}FIP2{{!}}GLC1E{{!}}HIP7{{!}}HYPL{{!}}NRP{{!}}TFIIIA-INTP |
|gene_description=optineurin | |gene_description=optineurin | ||
|gene_id=10133 | |gene_id=10133 | ||
| Line 24: | Line 25: | ||
|hgnc_mgi_id=HGNC:17142 | |hgnc_mgi_id=HGNC:17142 | ||
|nearest_ensembl=ENSG00000123240 | |nearest_ensembl=ENSG00000123240 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001008212 |
|nearest_refseq=NM_021980 | |nearest_refseq=NM_021980 | ||
|nearest_unigene=Hs.332706 | |nearest_unigene=Hs.332706 | ||
| − | |num_trans= | + | |num_trans=10133 |
|species=human | |species=human | ||
|start=13109176 | |start=13109176 | ||
| + | |start_of_center_position=13109193 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=AB385568 | + | |transcript_name=AB385568 KU178502 KU178503 KU178504 DQ895820 DQ893651 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_103940.1 | |tss_id=hg_103940.1 | ||
Latest revision as of 18:59, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 13109193 |
|---|---|
| End of the center position in the TSS region: | 13109194 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AB385568 KU178502 KU178503 KU178504 DQ895820 DQ893651 |
|---|---|
| Distance: | -54 |
| Num_trans: | 10133 |
| All_trans: | HGNC:17142 |
TATA-Box annotation
| Distance to TSS: | 9030 |
|---|---|
| Nearest PromoterID: | NM_001008212 |
| Entrez ID: | 10133 |
| Nearest Unigene: | Hs.332706 |
| Nearest Refseq: | NM_021980 |
| Nearest Ensembl: | ENSG00000123240 |
| Gene Name: | optineurin |
| Gene Alias: | ALS12|FIP2|GLC1E|HIP7|HYPL|NRP|TFIIIA-INTP |
| Gene Description: | optineurin |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.562189 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
