Difference between revisions of "TSS:Hg 10400.1"
From referenceTSS
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| Line 4: | Line 4: | ||
|SDR1= | |SDR1= | ||
|SDR16C1= | |SDR16C1= | ||
| − | |all_trans=ENST00000606790 | + | |all_trans=ENST00000606790.1:-497 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
|distance=-497 | |distance=-497 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-534 |
|end=12618747 | |end=12618747 | ||
| + | |end_of_center_position=12618744 | ||
|entrez_id=9249 | |entrez_id=9249 | ||
|gc_percent=0.547264 | |gc_percent=0.547264 | ||
| − | |gene_alias=DD83.1 | + | |gene_alias=DD83.1{{!}}RDH17{{!}}Rsdr1{{!}}SDR1{{!}}SDR16C1{{!}}retSDR1 |
|gene_description=dehydrogenase/reductase 3 | |gene_description=dehydrogenase/reductase 3 | ||
|gene_name=DHRS3 | |gene_name=DHRS3 | ||
| Line 20: | Line 21: | ||
|nearest_refseq=NM_004753 | |nearest_refseq=NM_004753 | ||
|nearest_unigene=Hs.289347 | |nearest_unigene=Hs.289347 | ||
| − | |num_trans= | + | |num_trans=1 |
|retSDR1= | |retSDR1= | ||
|species=human | |species=human | ||
|start=12618740 | |start=12618740 | ||
| + | |start_of_center_position=12618743 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-33(GGCTTTTAAAAG,-,0.00),-32(GCTTTTAAAAGT,+,0.00),-31(CTTTTAAAAGTC,+,0.00) |
| − | |transcript_name=ENST00000606790 | + | |transcript_name=ENST00000606790.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_10400.1 | |tss_id=hg_10400.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 17:40, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 12618743 |
|---|---|
| End of the center position in the TSS region: | 12618744 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000606790.1 |
|---|---|
| Distance: | -497 |
| Num_trans: | 1 |
| All_trans: | ENST00000606790.1:-497 |
TATA-Box annotation
| Distance to TSS: | -534 |
|---|---|
| Nearest PromoterID: | NM_004753 |
| Entrez ID: | 9249 |
| Nearest Unigene: | Hs.289347 |
| Nearest Refseq: | NM_004753 |
| Nearest Ensembl: | ENSG00000162496 |
| Gene Name: | DHRS3 |
| Gene Alias: | DD83.1|RDH17|Rsdr1|SDR1|SDR16C1|retSDR1 |
| Gene Description: | dehydrogenase/reductase 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.547264 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -33(GGCTTTTAAAAG,-,0.00),-32(GCTTTTAAAAGT,+,0.00),-31(CTTTTAAAAGTC,+,0.00) |
