Difference between revisions of "TSS:Hg 104050.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|HEL113= | |HEL113= | ||
| − | |all_trans= | + | |all_trans=LF211788:-21 MA447365:-21 LQ740465:-56 ENST00000544301.7:-74 NM_003380:-74 BC066956:149 ENST00000478746.1:193 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
| − | |distance=- | + | |distance=-21 |
| − | |distance_to_tss= | + | |distance_to_tss=77 |
|end=17228322 | |end=17228322 | ||
| + | |end_of_center_position=17228319 | ||
|entrez_id=7431 | |entrez_id=7431 | ||
|gc_percent=0.552239 | |gc_percent=0.552239 | ||
| − | |gene_alias= | + | |gene_alias=- |
|gene_description=vimentin | |gene_description=vimentin | ||
|gene_id=7431 | |gene_id=7431 | ||
| − | |gene_name= | + | |gene_name=VIM |
|gene_source=HGNC:12692 | |gene_source=HGNC:12692 | ||
|gene_symbol=VIM | |gene_symbol=VIM | ||
| Line 22: | Line 23: | ||
|nearest_refseq=NM_003380 | |nearest_refseq=NM_003380 | ||
|nearest_unigene=Hs.455493 | |nearest_unigene=Hs.455493 | ||
| − | |num_trans= | + | |num_trans=7 |
|species=human | |species=human | ||
|start=17228314 | |start=17228314 | ||
| + | |start_of_center_position=17228318 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF211788 MA447365 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_104050.1 | |tss_id=hg_104050.1 | ||
Latest revision as of 17:41, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 17228318 |
|---|---|
| End of the center position in the TSS region: | 17228319 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF211788 MA447365 |
|---|---|
| Distance: | -21 |
| Num_trans: | 7 |
| All_trans: | LF211788:-21 MA447365:-21 LQ740465:-56 ENST00000544301.7:-74 NM_003380:-74 BC066956:149 ENST00000478746.1:193 |
TATA-Box annotation
| Distance to TSS: | 77 |
|---|---|
| Nearest PromoterID: | NM_003380 |
| Entrez ID: | 7431 |
| Nearest Unigene: | Hs.455493 |
| Nearest Refseq: | NM_003380 |
| Nearest Ensembl: | ENSG00000026025 |
| Gene Name: | VIM |
| Gene Alias: | - |
| Gene Description: | vimentin |
| Gene Type: | protein-coding |
| CpG%: | 0.055 |
| GC%: | 0.552239 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
