Difference between revisions of "TSS:Hg 104051.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|HEL113= | |HEL113= | ||
| − | |all_trans= | + | |all_trans=LF211788:-70 MA447365:-70 LQ740465:-105 BC066956:105 ENST00000544301.7:-123 NM_003380:-123 ENST00000478746.1:149 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
| − | |distance=- | + | |distance=-70 |
| − | |distance_to_tss= | + | |distance_to_tss=124 |
|end=17228366 | |end=17228366 | ||
| + | |end_of_center_position=17228365 | ||
|entrez_id=7431 | |entrez_id=7431 | ||
|gc_percent=0.537313 | |gc_percent=0.537313 | ||
| − | |gene_alias= | + | |gene_alias=- |
|gene_description=vimentin | |gene_description=vimentin | ||
|gene_id=7431 | |gene_id=7431 | ||
| − | |gene_name= | + | |gene_name=VIM |
|gene_source=HGNC:12692 | |gene_source=HGNC:12692 | ||
|gene_symbol=VIM | |gene_symbol=VIM | ||
| Line 22: | Line 23: | ||
|nearest_refseq=NM_003380 | |nearest_refseq=NM_003380 | ||
|nearest_unigene=Hs.455493 | |nearest_unigene=Hs.455493 | ||
| − | |num_trans= | + | |num_trans=7 |
|species=human | |species=human | ||
|start=17228363 | |start=17228363 | ||
| + | |start_of_center_position=17228364 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF211788 MA447365 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_104051.1 | |tss_id=hg_104051.1 | ||
Latest revision as of 17:41, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 17228364 |
|---|---|
| End of the center position in the TSS region: | 17228365 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF211788 MA447365 |
|---|---|
| Distance: | -70 |
| Num_trans: | 7 |
| All_trans: | LF211788:-70 MA447365:-70 LQ740465:-105 BC066956:105 ENST00000544301.7:-123 NM_003380:-123 ENST00000478746.1:149 |
TATA-Box annotation
| Distance to TSS: | 124 |
|---|---|
| Nearest PromoterID: | NM_003380 |
| Entrez ID: | 7431 |
| Nearest Unigene: | Hs.455493 |
| Nearest Refseq: | NM_003380 |
| Nearest Ensembl: | ENSG00000026025 |
| Gene Name: | VIM |
| Gene Alias: | - |
| Gene Description: | vimentin |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.537313 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
