Difference between revisions of "TSS:Hg 104075.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=BC031031:400 | + | |all_trans=LF346187:-324 MA581764:-324 BC031031:400 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=-324 |
|distance_to_tss=-6192 | |distance_to_tss=-6192 | ||
|end=17236186 | |end=17236186 | ||
| + | |end_of_center_position=17236178 | ||
|entrez_id=100507347 | |entrez_id=100507347 | ||
|gc_percent=0.393035 | |gc_percent=0.393035 | ||
| Line 11: | Line 12: | ||
|gene_description=VIM antisense RNA 1 | |gene_description=VIM antisense RNA 1 | ||
|gene_id=7431 | |gene_id=7431 | ||
| − | |gene_name= | + | |gene_name=VIM-AS1 |
|gene_source=HGNC:12692 | |gene_source=HGNC:12692 | ||
|gene_symbol=VIM | |gene_symbol=VIM | ||
| Line 21: | Line 22: | ||
|nearest_refseq=NR_108060 | |nearest_refseq=NR_108060 | ||
|nearest_unigene=Hs.740502 | |nearest_unigene=Hs.740502 | ||
| − | |num_trans= | + | |num_trans=3 |
|species=human | |species=human | ||
|start=17236168 | |start=17236168 | ||
| + | |start_of_center_position=17236177 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF346187 MA581764 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_104075.1 | |tss_id=hg_104075.1 | ||
Latest revision as of 17:41, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 17236177 |
|---|---|
| End of the center position in the TSS region: | 17236178 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF346187 MA581764 |
|---|---|
| Distance: | -324 |
| Num_trans: | 3 |
| All_trans: | LF346187:-324 MA581764:-324 BC031031:400 |
TATA-Box annotation
| Distance to TSS: | -6192 |
|---|---|
| Nearest PromoterID: | NR_108061 |
| Entrez ID: | 100507347 |
| Nearest Unigene: | Hs.740502 |
| Nearest Refseq: | NR_108060 |
| Nearest Ensembl: | ENSG00000229124 |
| Gene Name: | VIM-AS1 |
| Gene Alias: | - |
| Gene Description: | VIM antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.01 |
| GC%: | 0.393035 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
