Difference between revisions of "TSS:Hg 104186.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:21013 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
|distance=99 | |distance=99 | ||
| − | |distance_to_tss= | + | |distance_to_tss=326867 |
|end=20143305 | |end=20143305 | ||
| + | |end_of_center_position=20143299 | ||
|entrez_id=84898 | |entrez_id=84898 | ||
|gc_percent=0.328358 | |gc_percent=0.328358 | ||
| Line 18: | Line 19: | ||
|hgnc_mgi_id=HGNC:21013 | |hgnc_mgi_id=HGNC:21013 | ||
|nearest_ensembl=ENSG00000120594 | |nearest_ensembl=ENSG00000120594 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001282736 |
|nearest_refseq=NM_032812 | |nearest_refseq=NM_032812 | ||
|nearest_unigene=Hs.99472 | |nearest_unigene=Hs.99472 | ||
| − | |num_trans= | + | |num_trans=84898 |
|species=human | |species=human | ||
|start=20143292 | |start=20143292 | ||
| + | |start_of_center_position=20143298 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-55(TTTTATATGGGC,+,0.00),53(CACCTTTAATGG,-,0.00),55(CCTTTAATGGCA,+,0.00) |
|transcript_name=AK027529 | |transcript_name=AK027529 | ||
|tss_classification=no | |tss_classification=no | ||
Latest revision as of 19:04, 19 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 20143298 |
|---|---|
| End of the center position in the TSS region: | 20143299 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AK027529 |
|---|---|
| Distance: | 99 |
| Num_trans: | 84898 |
| All_trans: | HGNC:21013 |
TATA-Box annotation
| Distance to TSS: | 326867 |
|---|---|
| Nearest PromoterID: | NM_001282736 |
| Entrez ID: | 84898 |
| Nearest Unigene: | Hs.99472 |
| Nearest Refseq: | NM_032812 |
| Nearest Ensembl: | ENSG00000120594 |
| Gene Name: | plexin domain containing 2 |
| Gene Alias: | TEM7R |
| Gene Description: | plexin domain containing 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.328358 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -55(TTTTATATGGGC,+,0.00),53(CACCTTTAATGG,-,0.00),55(CCTTTAATGGCA,+,0.00) |
