Difference between revisions of "TSS:Hg 104639.1"
From referenceTSS
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|VLA-BETA= | |VLA-BETA= | ||
|VLAB= | |VLAB= | ||
| + | |all_trans=LF375446:-53 MA611023:-53 LF375444:55 MA611021:55 ENST00000659846.1:335 | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.165 | |cpg_percent=0.165 | ||
| − | |distance= | + | |distance=-53 |
| − | |distance_to_tss= | + | |distance_to_tss=130 |
|end=32958102 | |end=32958102 | ||
| + | |end_of_center_position=32958100 | ||
|entrez_id=3688 | |entrez_id=3688 | ||
|gc_percent=0.820896 | |gc_percent=0.820896 | ||
| − | |gene_alias=CD29 | + | |gene_alias=CD29{{!}}FNRB{{!}}GPIIA{{!}}MDF2{{!}}MSK12{{!}}VLA-BETA{{!}}VLAB |
|gene_description=integrin subunit beta 1 | |gene_description=integrin subunit beta 1 | ||
|gene_name=ITGB1 | |gene_name=ITGB1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000150093 | |nearest_ensembl=ENSG00000150093 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_002211 |
|nearest_refseq=NM_002211 | |nearest_refseq=NM_002211 | ||
|nearest_unigene=Hs.643813 | |nearest_unigene=Hs.643813 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=human | |species=human | ||
|start=32958097 | |start=32958097 | ||
| + | |start_of_center_position=32958099 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF375446 MA611023 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_104639.1 | |tss_id=hg_104639.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 17:55, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 32958099 |
|---|---|
| End of the center position in the TSS region: | 32958100 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | LF375446 MA611023 |
|---|---|
| Distance: | -53 |
| Num_trans: | 5 |
| All_trans: | LF375446:-53 MA611023:-53 LF375444:55 MA611021:55 ENST00000659846.1:335 |
TATA-Box annotation
| Distance to TSS: | 130 |
|---|---|
| Nearest PromoterID: | NM_002211 |
| Entrez ID: | 3688 |
| Nearest Unigene: | Hs.643813 |
| Nearest Refseq: | NM_002211 |
| Nearest Ensembl: | ENSG00000150093 |
| Gene Name: | ITGB1 |
| Gene Alias: | CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB |
| Gene Description: | integrin subunit beta 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.165 |
| GC%: | 0.820896 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
