Difference between revisions of "TSS:Hg 104808.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:44989 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
| Line 6: | Line 6: | ||
|distance_to_tss=50 | |distance_to_tss=50 | ||
|end=46398420 | |end=46398420 | ||
| + | |end_of_center_position=46398412 | ||
|entrez_id=643650 | |entrez_id=643650 | ||
|gc_percent=0.616915 | |gc_percent=0.616915 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=long intergenic non-protein coding RNA 842 | |gene_description=long intergenic non-protein coding RNA 842 | ||
| − | |gene_id=643650 | + | |gene_id=643650 |
| − | |gene_name= | + | |gene_name=long intergenic non-protein coding RNA 842 |
| − | |gene_source= | + | |gene_source=HGNC:44989 |
| − | |gene_symbol= | + | |gene_symbol=LINC00842 |
| − | |gene_synonyms= | + | |gene_synonyms= |
|gene_type=ncRNA | |gene_type=ncRNA | ||
| − | |hgnc_mgi_id= | + | |hgnc_mgi_id=HGNC:44989 |
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000285294 |
|nearest_promoter_id=NR_033957 | |nearest_promoter_id=NR_033957 | ||
|nearest_refseq=NR_033957 | |nearest_refseq=NR_033957 | ||
|nearest_unigene=Hs.744313 | |nearest_unigene=Hs.744313 | ||
| − | |num_trans= | + | |num_trans=643650 |
|species=human | |species=human | ||
|start=46398403 | |start=46398403 | ||
| + | |start_of_center_position=46398411 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000614356 | + | |transcript_name=ENST00000614356.1 BC033221 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_104808.1 | |tss_id=hg_104808.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=Q8N4X2 | |uniprot_id=Q8N4X2 | ||
}} | }} | ||
Latest revision as of 19:18, 19 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 46398411 |
|---|---|
| End of the center position in the TSS region: | 46398412 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000614356.1 BC033221 |
|---|---|
| Distance: | -42 |
| Num_trans: | 643650 |
| All_trans: | HGNC:44989 |
TATA-Box annotation
| Distance to TSS: | 50 |
|---|---|
| Nearest PromoterID: | NR_033957 |
| Entrez ID: | 643650 |
| Nearest Unigene: | Hs.744313 |
| Nearest Refseq: | NR_033957 |
| Nearest Ensembl: | ENSG00000285294 |
| Gene Name: | long intergenic non-protein coding RNA 842 |
| Gene Alias: | - |
| Gene Description: | long intergenic non-protein coding RNA 842 |
| Gene Type: | ncRNA |
| CpG%: | 0.09 |
| GC%: | 0.616915 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
