Difference between revisions of "TSS:Mm 147186.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000180516.2:0 ENSMUST00000181887.1:0 ENSMUST00000192479.1:0 uc008epl.1:0 AK042845:0 AK136271:0 AK046617:0 AK080748:31 |chr=chr18 |cpg_percent=0...") |
|||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=MGI:3642892 |
|chr=chr18 | |chr=chr18 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=34834 |
|end=37178531 | |end=37178531 | ||
| + | |end_of_center_position=37178513 | ||
|entrez_id=353237 | |entrez_id=353237 | ||
|gc_percent=0.597015 | |gc_percent=0.597015 | ||
|gene_alias=CNRc2 | |gene_alias=CNRc2 | ||
| − | |gene_description= | + | |gene_description=protocadherin alpha subfamily C, 2 |
|gene_id=100038509 | |gene_id=100038509 | ||
|gene_name=predicted gene 10544 | |gene_name=predicted gene 10544 | ||
| Line 21: | Line 22: | ||
|nearest_refseq=NM_001003672 | |nearest_refseq=NM_001003672 | ||
|nearest_unigene=Mm.308500 | |nearest_unigene=Mm.308500 | ||
| − | |num_trans= | + | |num_trans=100038509 |
|species=mouse | |species=mouse | ||
|start=37178493 | |start=37178493 | ||
| + | |start_of_center_position=37178512 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-46(GGCTATTAAATG,-,0.00) |
| − | |transcript_name=ENSMUST00000180516.2 ENSMUST00000181887.1 ENSMUST00000192479 | + | |transcript_name=ENSMUST00000180516.2 ENSMUST00000181887.1 ENSMUST00000192479.1 AK042845 AK136271 AK046617 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_147186.1 | |tss_id=mm_147186.1 | ||
Latest revision as of 03:46, 27 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 37178512 |
|---|---|
| End of the center position in the TSS region: | 37178513 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000180516.2 ENSMUST00000181887.1 ENSMUST00000192479.1 AK042845 AK136271 AK046617 |
|---|---|
| Distance: | 0 |
| Num_trans: | 100038509 |
| All_trans: | MGI:3642892 |
TATA-Box annotation
| Distance to TSS: | 34834 |
|---|---|
| Nearest PromoterID: | NM_001003672 |
| Entrez ID: | 353237 |
| Nearest Unigene: | Mm.308500 |
| Nearest Refseq: | NM_001003672 |
| Nearest Ensembl: | ENSMUSG00000102697 |
| Gene Name: | predicted gene 10544 |
| Gene Alias: | CNRc2 |
| Gene Description: | protocadherin alpha subfamily C, 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.597015 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -46(GGCTATTAAATG,-,0.00) |
