Difference between revisions of "TSS:Hg 104888.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:26973 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
|distance=53 | |distance=53 | ||
| − | |distance_to_tss= | + | |distance_to_tss=27727 |
|end=49326904 | |end=49326904 | ||
| + | |end_of_center_position=49326897 | ||
|entrez_id=118461 | |entrez_id=118461 | ||
|gc_percent=0.502488 | |gc_percent=0.502488 | ||
| − | |gene_alias= | + | |gene_alias=CEFIP |
|gene_description=chromosome 10 open reading frame 71 | |gene_description=chromosome 10 open reading frame 71 | ||
|gene_id=118461 | |gene_id=118461 | ||
| Line 21: | Line 22: | ||
|nearest_refseq=NM_199459 | |nearest_refseq=NM_199459 | ||
|nearest_unigene=Hs.585480 | |nearest_unigene=Hs.585480 | ||
| − | |num_trans= | + | |num_trans=118461 |
|species=human | |species=human | ||
|start=49326889 | |start=49326889 | ||
| + | |start_of_center_position=49326896 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=87(CTTTTTAGATCC,+,0.00) |
|transcript_name=AJ237663 | |transcript_name=AJ237663 | ||
|tss_classification=yes | |tss_classification=yes | ||
Latest revision as of 19:19, 19 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 49326896 |
|---|---|
| End of the center position in the TSS region: | 49326897 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AJ237663 |
|---|---|
| Distance: | 53 |
| Num_trans: | 118461 |
| All_trans: | HGNC:26973 |
TATA-Box annotation
| Distance to TSS: | 27727 |
|---|---|
| Nearest PromoterID: | NM_001135196 |
| Entrez ID: | 118461 |
| Nearest Unigene: | Hs.585480 |
| Nearest Refseq: | NM_199459 |
| Nearest Ensembl: | ENSG00000177354 |
| Gene Name: | chromosome 10 open reading frame 71 |
| Gene Alias: | CEFIP |
| Gene Description: | chromosome 10 open reading frame 71 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.502488 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 87(CTTTTTAGATCC,+,0.00) |
