Difference between revisions of "TSS:Hg 105186.1"
From referenceTSS
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|TRIP-8= | |TRIP-8= | ||
|TRIP8= | |TRIP8= | ||
| + | |all_trans=ENST00000654191.1:-10 | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=-10 |
| − | |distance_to_tss=- | + | |distance_to_tss=-350697 |
|end=63872594 | |end=63872594 | ||
| + | |end_of_center_position=63872587 | ||
|entrez_id=221037 | |entrez_id=221037 | ||
|gc_percent=0.447761 | |gc_percent=0.447761 | ||
| − | |gene_alias=KDM3C | + | |gene_alias=KDM3C{{!}}TRIP-8{{!}}TRIP8 |
|gene_description=jumonji domain containing 1C | |gene_description=jumonji domain containing 1C | ||
|gene_name=JMJD1C | |gene_name=JMJD1C | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000171988 | |nearest_ensembl=ENSG00000171988 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001318154 |
|nearest_refseq=NM_004241 | |nearest_refseq=NM_004241 | ||
|nearest_unigene=Hs.413416 | |nearest_unigene=Hs.413416 | ||
| − | |num_trans= | + | |num_trans=1 |
|species=human | |species=human | ||
|start=63872579 | |start=63872579 | ||
| + | |start_of_center_position=63872586 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=16(CTGCATAAAAGC,-,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000654191.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_105186.1 | |tss_id=hg_105186.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 18:08, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 63872586 |
|---|---|
| End of the center position in the TSS region: | 63872587 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000654191.1 |
|---|---|
| Distance: | -10 |
| Num_trans: | 1 |
| All_trans: | ENST00000654191.1:-10 |
TATA-Box annotation
| Distance to TSS: | -350697 |
|---|---|
| Nearest PromoterID: | NM_001318154 |
| Entrez ID: | 221037 |
| Nearest Unigene: | Hs.413416 |
| Nearest Refseq: | NM_004241 |
| Nearest Ensembl: | ENSG00000171988 |
| Gene Name: | JMJD1C |
| Gene Alias: | KDM3C|TRIP-8|TRIP8 |
| Gene Description: | jumonji domain containing 1C |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.447761 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 16(CTGCATAAAAGC,-,0.00) |
