Difference between revisions of "TSS:Hg 106213.1"
From referenceTSS
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=MP014882:-27 ENST00000336126.6:-49 NM_032373:-49 ENST00000490164.1:55 AL832496:60 NR_046310:-110 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
| − | |distance= | + | |distance=-27 |
| − | |distance_to_tss= | + | |distance_to_tss=57 |
|end=91220728 | |end=91220728 | ||
| + | |end_of_center_position=91220720 | ||
|entrez_id=84333 | |entrez_id=84333 | ||
|gc_percent=0.771144 | |gc_percent=0.771144 | ||
| Line 11: | Line 12: | ||
|gene_description=polycomb group ring finger 5 | |gene_description=polycomb group ring finger 5 | ||
|gene_id=84333 | |gene_id=84333 | ||
| − | |gene_name= | + | |gene_name=PCGF5 |
|gene_source=HGNC:28264 | |gene_source=HGNC:28264 | ||
|gene_symbol=PCGF5 | |gene_symbol=PCGF5 | ||
| Line 18: | Line 19: | ||
|hgnc_mgi_id=HGNC:28264 | |hgnc_mgi_id=HGNC:28264 | ||
|nearest_ensembl=ENSG00000180628 | |nearest_ensembl=ENSG00000180628 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_032373 |
|nearest_refseq=NM_032373 | |nearest_refseq=NM_032373 | ||
|nearest_unigene=Hs.500512 | |nearest_unigene=Hs.500512 | ||
| − | |num_trans= | + | |num_trans=6 |
|species=human | |species=human | ||
|start=91220711 | |start=91220711 | ||
| + | |start_of_center_position=91220719 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=MP014882 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_106213.1 | |tss_id=hg_106213.1 | ||
Latest revision as of 18:32, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 91220719 |
|---|---|
| End of the center position in the TSS region: | 91220720 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | MP014882 |
|---|---|
| Distance: | -27 |
| Num_trans: | 6 |
| All_trans: | MP014882:-27 ENST00000336126.6:-49 NM_032373:-49 ENST00000490164.1:55 AL832496:60 NR_046310:-110 |
TATA-Box annotation
| Distance to TSS: | 57 |
|---|---|
| Nearest PromoterID: | NM_032373 |
| Entrez ID: | 84333 |
| Nearest Unigene: | Hs.500512 |
| Nearest Refseq: | NM_032373 |
| Nearest Ensembl: | ENSG00000180628 |
| Gene Name: | PCGF5 |
| Gene Alias: | RNF159 |
| Gene Description: | polycomb group ring finger 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.771144 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
