Difference between revisions of "TSS:Mm 162649.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | | | + | |CD21= |
| + | |CD35= | ||
| + | |Cr-1= | ||
| + | |Cr-2= | ||
| + | |Cr1= | ||
| + | |all_trans=MGI:88489 | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
|distance=-21 | |distance=-21 | ||
| − | |distance_to_tss= | + | |distance_to_tss=28 |
|end=195176694 | |end=195176694 | ||
| + | |end_of_center_position=195176691 | ||
|entrez_id=12902 | |entrez_id=12902 | ||
|gc_percent=0.61194 | |gc_percent=0.61194 | ||
| − | |gene_alias=C3DR | + | |gene_alias=C3DR{{!}}CD21{{!}}CD35{{!}}Cr-1{{!}}Cr-2{{!}}Cr1 |
|gene_description=complement receptor 2 | |gene_description=complement receptor 2 | ||
|gene_id=12902 | |gene_id=12902 | ||
| Line 18: | Line 24: | ||
|hgnc_mgi_id=MGI:88489 | |hgnc_mgi_id=MGI:88489 | ||
|nearest_ensembl=ENSMUSG00000026616 | |nearest_ensembl=ENSMUSG00000026616 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001368765 |
|nearest_refseq=NM_007758 | |nearest_refseq=NM_007758 | ||
|nearest_unigene=Mm.235387 | |nearest_unigene=Mm.235387 | ||
| − | |num_trans= | + | |num_trans=12902 |
|species=mouse | |species=mouse | ||
|start=195176687 | |start=195176687 | ||
| + | |start_of_center_position=195176690 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-60(TGCTATTTAAGG,-,0.00) |
| − | |transcript_name=ENSMUST00000082321.8 ENSMUST00000195347.5 ENSMUST00000195722 | + | |transcript_name=ENSMUST00000082321.8 ENSMUST00000195347.5 ENSMUST00000195722.1 AK003072 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_162649.1 | |tss_id=mm_162649.1 | ||
Latest revision as of 09:27, 27 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 195176690 |
|---|---|
| End of the center position in the TSS region: | 195176691 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000082321.8 ENSMUST00000195347.5 ENSMUST00000195722.1 AK003072 |
|---|---|
| Distance: | -21 |
| Num_trans: | 12902 |
| All_trans: | MGI:88489 |
TATA-Box annotation
| Distance to TSS: | 28 |
|---|---|
| Nearest PromoterID: | NM_001368765 |
| Entrez ID: | 12902 |
| Nearest Unigene: | Mm.235387 |
| Nearest Refseq: | NM_007758 |
| Nearest Ensembl: | ENSMUSG00000026616 |
| Gene Name: | complement receptor 2 |
| Gene Alias: | C3DR|CD21|CD35|Cr-1|Cr-2|Cr1 |
| Gene Description: | complement receptor 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.61194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -60(TGCTATTTAAGG,-,0.00) |
