Difference between revisions of "TSS:Mm 162950.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=AK209388:350 |chr=chr11 |cpg_percent=0.005 |distance=350 |distance_to_tss=15870 |end=3393369 |entrez_id=16886 |gc_percent=0.462687 |gene_alias=Limk-2|wh...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=MGI:1197517 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| Line 6: | Line 6: | ||
|distance_to_tss=15870 | |distance_to_tss=15870 | ||
|end=3393369 | |end=3393369 | ||
| + | |end_of_center_position=3393368 | ||
|entrez_id=16886 | |entrez_id=16886 | ||
|gc_percent=0.462687 | |gc_percent=0.462687 | ||
| − | |gene_alias=Limk-2 | + | |gene_alias=Limk-2{{!}}whe |
|gene_description=LIM motif-containing protein kinase 2 | |gene_description=LIM motif-containing protein kinase 2 | ||
|gene_id=16886 | |gene_id=16886 | ||
| Line 21: | Line 22: | ||
|nearest_refseq=NM_010718 | |nearest_refseq=NM_010718 | ||
|nearest_unigene=Mm.124176 | |nearest_unigene=Mm.124176 | ||
| − | |num_trans= | + | |num_trans=16886 |
|species=mouse | |species=mouse | ||
|start=3393366 | |start=3393366 | ||
| + | |start_of_center_position=3393367 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-34(TGGTATAAAAGA,-,0.00) |
|transcript_name=AK209388 | |transcript_name=AK209388 | ||
|tss_classification=no | |tss_classification=no | ||
| Line 31: | Line 33: | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
| + | |whe= | ||
}} | }} | ||
Latest revision as of 09:34, 27 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 3393367 |
|---|---|
| End of the center position in the TSS region: | 3393368 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AK209388 |
|---|---|
| Distance: | 350 |
| Num_trans: | 16886 |
| All_trans: | MGI:1197517 |
TATA-Box annotation
| Distance to TSS: | 15870 |
|---|---|
| Nearest PromoterID: | NM_010718 |
| Entrez ID: | 16886 |
| Nearest Unigene: | Mm.124176 |
| Nearest Refseq: | NM_010718 |
| Nearest Ensembl: | ENSMUSG00000020451 |
| Gene Name: | LIM motif-containing protein kinase 2 |
| Gene Alias: | Limk-2|whe |
| Gene Description: | LIM motif-containing protein kinase 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.462687 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -34(TGGTATAAAAGA,-,0.00) |
