Difference between revisions of "TSS:Hg 106720.1"
From referenceTSS
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| Line 3: | Line 3: | ||
|PSD1= | |PSD1= | ||
|TYL= | |TYL= | ||
| − | |all_trans=KJ903162:-286 KJ899530:-296 BC002912:-378 | + | |all_trans=LF345875:-282 MA581452:-282 KJ903162:-286 KJ899530:-296 BC002912:-378 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| − | |distance=- | + | |distance=-282 |
|distance_to_tss=-1511 | |distance_to_tss=-1511 | ||
|end=102421464 | |end=102421464 | ||
| + | |end_of_center_position=102421445 | ||
|entrez_id=5662 | |entrez_id=5662 | ||
|gc_percent=0.711443 | |gc_percent=0.711443 | ||
| − | |gene_alias=EFA6 | + | |gene_alias=EFA6{{!}}EFA6A{{!}}PSD1{{!}}TYL |
|gene_description=pleckstrin and Sec7 domain containing | |gene_description=pleckstrin and Sec7 domain containing | ||
|gene_name=PSD | |gene_name=PSD | ||
| Line 19: | Line 20: | ||
|nearest_refseq=NM_002779 | |nearest_refseq=NM_002779 | ||
|nearest_unigene=Hs.154658 | |nearest_unigene=Hs.154658 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=human | |species=human | ||
|start=102421425 | |start=102421425 | ||
| + | |start_of_center_position=102421444 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF345875 MA581452 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_106720.1 | |tss_id=hg_106720.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 18:44, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 102421444 |
|---|---|
| End of the center position in the TSS region: | 102421445 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | LF345875 MA581452 |
|---|---|
| Distance: | -282 |
| Num_trans: | 5 |
| All_trans: | LF345875:-282 MA581452:-282 KJ903162:-286 KJ899530:-296 BC002912:-378 |
TATA-Box annotation
| Distance to TSS: | -1511 |
|---|---|
| Nearest PromoterID: | NM_001270965 |
| Entrez ID: | 5662 |
| Nearest Unigene: | Hs.154658 |
| Nearest Refseq: | NM_002779 |
| Nearest Ensembl: | ENSG00000059915 |
| Gene Name: | PSD |
| Gene Alias: | EFA6|EFA6A|PSD1|TYL |
| Gene Description: | pleckstrin and Sec7 domain containing |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.711443 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
