Difference between revisions of "TSS:Mm 1823.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=MGI:104688 |
| + | |alpha3(IV)= | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| Line 6: | Line 7: | ||
|distance_to_tss=229 | |distance_to_tss=229 | ||
|end=82587156 | |end=82587156 | ||
| + | |end_of_center_position=82587150 | ||
|entrez_id=12828 | |entrez_id=12828 | ||
|gc_percent=0.61194 | |gc_percent=0.61194 | ||
| − | |gene_alias=[a]3(IV) | + | |gene_alias=[a]3(IV){{!}}alpha3(IV) |
| − | |gene_description= | + | |gene_description=collagen, type IV, alpha 3 |
|gene_id=12828 | |gene_id=12828 | ||
| − | |gene_name= | + | |gene_name=collagen, type IV, alpha 3 |
|gene_source=MGI:104688 | |gene_source=MGI:104688 | ||
|gene_symbol=Col4a3 | |gene_symbol=Col4a3 | ||
| Line 21: | Line 23: | ||
|nearest_refseq=NM_007734 | |nearest_refseq=NM_007734 | ||
|nearest_unigene=Mm.389135 | |nearest_unigene=Mm.389135 | ||
| − | |num_trans= | + | |num_trans=12828 |
|species=mouse | |species=mouse | ||
|start=82587143 | |start=82587143 | ||
| + | |start_of_center_position=82587149 | ||
|strand=+ | |strand=+ | ||
|transcript_name=ENSMUST00000113457.8 AF169387 | |transcript_name=ENSMUST00000113457.8 AF169387 | ||
Latest revision as of 13:37, 27 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 82587149 |
|---|---|
| End of the center position in the TSS region: | 82587150 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENSMUST00000113457.8 AF169387 |
|---|---|
| Distance: | -168 |
| Num_trans: | 12828 |
| All_trans: | MGI:104688 |
TATA-Box annotation
| Distance to TSS: | 229 |
|---|---|
| Nearest PromoterID: | NM_007734 |
| Entrez ID: | 12828 |
| Nearest Unigene: | Mm.389135 |
| Nearest Refseq: | NM_007734 |
| Nearest Ensembl: | ENSMUSG00000079465 |
| Gene Name: | collagen, type IV, alpha 3 |
| Gene Alias: | [a]3(IV)|alpha3(IV) |
| Gene Description: | collagen, type IV, alpha 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.61194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
