Difference between revisions of "TSS:Hg 102984.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=HGNC:11478 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.15 | |cpg_percent=0.15 | ||
| − | |distance_to_tss=- | + | |distance=26 |
| + | |distance_to_tss=-48 | ||
| + | |end=133336239 | ||
| + | |end_of_center_position=133336236 | ||
|entrez_id=6838 | |entrez_id=6838 | ||
|gc_percent=0.721393 | |gc_percent=0.721393 | ||
|gene_alias=RRP14 | |gene_alias=RRP14 | ||
|gene_description=surfeit 6 | |gene_description=surfeit 6 | ||
| − | |gene_name=SURF6 | + | |gene_id=6838 |
| + | |gene_name=surfeit 6 | ||
| + | |gene_source=HGNC:11478 | ||
| + | |gene_symbol=SURF6 | ||
| + | |gene_synonyms=FLJ30322 RRP14 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:11478 | ||
|nearest_ensembl=ENSG00000148296 | |nearest_ensembl=ENSG00000148296 | ||
|nearest_promoter_id=NM_006753 | |nearest_promoter_id=NM_006753 | ||
|nearest_refseq=NM_006753 | |nearest_refseq=NM_006753 | ||
|nearest_unigene=Hs.274430 | |nearest_unigene=Hs.274430 | ||
| + | |num_trans=6838 | ||
| + | |species=human | ||
| + | |start=133336232 | ||
| + | |start_of_center_position=133336235 | ||
| + | |strand=- | ||
| + | |transcript_name=AK054884 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102984.1 | |tss_id=hg_102984.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B3KNS8 | ||
}} | }} | ||
Latest revision as of 18:38, 19 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 133336235 |
|---|---|
| End of the center position in the TSS region: | 133336236 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AK054884 |
|---|---|
| Distance: | 26 |
| Num_trans: | 6838 |
| All_trans: | HGNC:11478 |
TATA-Box annotation
| Distance to TSS: | -48 |
|---|---|
| Nearest PromoterID: | NM_006753 |
| Entrez ID: | 6838 |
| Nearest Unigene: | Hs.274430 |
| Nearest Refseq: | NM_006753 |
| Nearest Ensembl: | ENSG00000148296 |
| Gene Name: | surfeit 6 |
| Gene Alias: | RRP14 |
| Gene Description: | surfeit 6 |
| Gene Type: | protein-coding |
| CpG%: | 0.15 |
| GC%: | 0.721393 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
