Difference between revisions of "TSS:Hg 102987.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.14 |distance_to_tss=13 |entrez_id=6834 |gc_percent=0.791045 |gene_alias=CMT4K |gene_description="SURF1, cytochrome c oxidase assembly factor" |gene_...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=HGNC:11474 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.14 | |cpg_percent=0.14 | ||
| + | |distance=0 | ||
|distance_to_tss=13 | |distance_to_tss=13 | ||
| + | |end=133356495 | ||
| + | |end_of_center_position=133356472 | ||
|entrez_id=6834 | |entrez_id=6834 | ||
|gc_percent=0.791045 | |gc_percent=0.791045 | ||
|gene_alias=CMT4K | |gene_alias=CMT4K | ||
| − | |gene_description= | + | |gene_description=SURF1 cytochrome c oxidase assembly factor |
| − | |gene_name=SURF1 | + | |gene_id=6834 |
| + | |gene_name=SURF1 cytochrome c oxidase assembly factor | ||
| + | |gene_source=HGNC:11474 | ||
| + | |gene_symbol=SURF1 | ||
| + | |gene_synonyms=SHY1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:11474 | ||
|nearest_ensembl=ENSG00000148290 | |nearest_ensembl=ENSG00000148290 | ||
|nearest_promoter_id=NM_001280787 | |nearest_promoter_id=NM_001280787 | ||
|nearest_refseq=NM_003172 | |nearest_refseq=NM_003172 | ||
|nearest_unigene=Hs.512464 | |nearest_unigene=Hs.512464 | ||
| + | |num_trans=6834 | ||
| + | |species=human | ||
| + | |start=133356448 | ||
| + | |start_of_center_position=133356471 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000371974.8 ENST00000615505.4 BC028314 BC071658 Z35093 AK291122 KR710709 KR710710 KR710711 DQ890823 DQ893977 KU178341 KU178342 KU178343 CU687126 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102987.1 | |tss_id=hg_102987.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A087WYS9 A0A0S2Z4J4 A0A0S2Z523 E5KRX5 Q15526 | ||
}} | }} | ||
Latest revision as of 18:39, 19 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 133356471 |
|---|---|
| End of the center position in the TSS region: | 133356472 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000371974.8 ENST00000615505.4 BC028314 BC071658 Z35093 AK291122 KR710709 KR710710 KR710711 DQ890823 DQ893977 KU178341 KU178342 KU178343 CU687126 |
|---|---|
| Distance: | 0 |
| Num_trans: | 6834 |
| All_trans: | HGNC:11474 |
TATA-Box annotation
| Distance to TSS: | 13 |
|---|---|
| Nearest PromoterID: | NM_001280787 |
| Entrez ID: | 6834 |
| Nearest Unigene: | Hs.512464 |
| Nearest Refseq: | NM_003172 |
| Nearest Ensembl: | ENSG00000148290 |
| Gene Name: | SURF1 cytochrome c oxidase assembly factor |
| Gene Alias: | CMT4K |
| Gene Description: | SURF1 cytochrome c oxidase assembly factor |
| Gene Type: | protein-coding |
| CpG%: | 0.14 |
| GC%: | 0.791045 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
