Difference between revisions of "TSS:Mm 50353.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000130896.1:0 ENSMUST00000204879.1:0 ENSMUST00000204121.1:0 AK137310:0 AK089041:0 BC085128:0 BC092301:-4 BC013644:-4 AK170797:-13 ENSMUST000001...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |Ap4= |
| + | |E430037F08Rik= | ||
| + | |Zfp-464= | ||
| + | |Zfp464= | ||
| + | |all_trans=MGI:1889817 MGI:5753541 | ||
|chr=chr6 | |chr=chr6 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| Line 6: | Line 10: | ||
|distance_to_tss=58 | |distance_to_tss=58 | ||
|end=48593952 | |end=48593952 | ||
| + | |end_of_center_position=48593942 | ||
|entrez_id=58887 | |entrez_id=58887 | ||
|gc_percent=0.721393 | |gc_percent=0.721393 | ||
| − | |gene_alias=AI425994 | + | |gene_alias=AI425994{{!}}Ap4{{!}}E430037F08Rik{{!}}Zfp-464{{!}}Zfp464 |
|gene_description=replication initiator 1 | |gene_description=replication initiator 1 | ||
|gene_id=58887 | |gene_id=58887 | ||
| − | |gene_name=replication initiator 1 | + | |gene_name=predicted gene 44965; replication initiator 1 |
| − | |gene_source=MGI:1889817 | + | |gene_source=MGI:1889817 MGI:5753541 |
| − | |gene_symbol=Repin1 | + | |gene_symbol=Gm44965 Repin1 |
|gene_synonyms=AP4 E430037F08Rik Zfp464 | |gene_synonyms=AP4 E430037F08Rik Zfp464 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=MGI:1889817 | + | |hgnc_mgi_id=MGI:1889817 MGI:5753541 |
|nearest_ensembl=ENSMUSG00000052751 | |nearest_ensembl=ENSMUSG00000052751 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_175099 |
|nearest_refseq=NM_175099 | |nearest_refseq=NM_175099 | ||
|nearest_unigene=Mm.219183 | |nearest_unigene=Mm.219183 | ||
| − | |num_trans= | + | |num_trans=58887 |
|species=mouse | |species=mouse | ||
|start=48593930 | |start=48593930 | ||
| + | |start_of_center_position=48593941 | ||
|strand=+ | |strand=+ | ||
|transcript_name=ENSMUST00000130896.1 ENSMUST00000204879.1 ENSMUST00000204121.1 AK137310 AK089041 BC085128 | |transcript_name=ENSMUST00000130896.1 ENSMUST00000204879.1 ENSMUST00000204121.1 AK137310 AK089041 BC085128 | ||
| Line 29: | Line 35: | ||
|tss_id=mm_50353.1 | |tss_id=mm_50353.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A0N4SVR3 |
}} | }} | ||
Latest revision as of 01:25, 28 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 48593941 |
|---|---|
| End of the center position in the TSS region: | 48593942 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENSMUST00000130896.1 ENSMUST00000204879.1 ENSMUST00000204121.1 AK137310 AK089041 BC085128 |
|---|---|
| Distance: | 0 |
| Num_trans: | 58887 |
| All_trans: | MGI:1889817 MGI:5753541 |
TATA-Box annotation
| Distance to TSS: | 58 |
|---|---|
| Nearest PromoterID: | NM_175099 |
| Entrez ID: | 58887 |
| Nearest Unigene: | Mm.219183 |
| Nearest Refseq: | NM_175099 |
| Nearest Ensembl: | ENSMUSG00000052751 |
| Gene Name: | predicted gene 44965; replication initiator 1 |
| Gene Alias: | AI425994|Ap4|E430037F08Rik|Zfp-464|Zfp464 |
| Gene Description: | replication initiator 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.721393 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
