Difference between revisions of "TSS:Hg 103089.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.04 |distance_to_tss=28008 |entrez_id=100506599 |gc_percent=0.527363 |gene_alias=- |gene_description=PPP1R26 antisense RNA 1 |gene_name=PPP1R26-AS1 |...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |chr=chr9 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| + | |distance=NA | ||
|distance_to_tss=28008 | |distance_to_tss=28008 | ||
| + | |end=135444253 | ||
| + | |end_of_center_position=135444242 | ||
|entrez_id=100506599 | |entrez_id=100506599 | ||
|gc_percent=0.527363 | |gc_percent=0.527363 | ||
| Line 12: | Line 16: | ||
|nearest_refseq=NR_038969 | |nearest_refseq=NR_038969 | ||
|nearest_unigene=Hs.561897 | |nearest_unigene=Hs.561897 | ||
| − | |tata_box= | + | |num_trans=0 |
| + | |species=human | ||
| + | |start=135444229 | ||
| + | |start_of_center_position=135444241 | ||
| + | |strand=- | ||
| + | |tata_box=-43(GCCCTTAAAAGG,-,0.00),-42(CCCTTAAAAGGG,+,0.00),-41(CCTTAAAAGGGC,+,0.00) | ||
| + | |transcript_name= | ||
| + | |tss_classification=no | ||
|tss_id=hg_103089.1 | |tss_id=hg_103089.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 17:18, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 135444241 |
|---|---|
| End of the center position in the TSS region: | 135444242 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | 28008 |
|---|---|
| Nearest PromoterID: | NR_038969 |
| Entrez ID: | 100506599 |
| Nearest Unigene: | Hs.561897 |
| Nearest Refseq: | NR_038969 |
| Nearest Ensembl: | ENSG00000225361 |
| Gene Name: | PPP1R26-AS1 |
| Gene Alias: | - |
| Gene Description: | PPP1R26 antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.04 |
| GC%: | 0.527363 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -43(GCCCTTAAAAGG,-,0.00),-42(CCCTTAAAAGGG,+,0.00),-41(CCTTAAAAGGGC,+,0.00) |
