Personal tools

Difference between revisions of "TSS:Mm 50620.1"

From referenceTSS

Jump to: navigation, search
(Created page with "{{TSSDetail |all_trans=uc009bww.1:0 AK170481:0 AK164549:0 ENSMUST00000167628.1:-35 ENSMUST00000171601.7:-488 |chr=chr6 |cpg_percent=0.075 |distance=0 |distance_to_tss=669 |end...")
 
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
 
{{TSSDetail
 
{{TSSDetail
|all_trans=uc009bww.1:0 AK170481:0 AK164549:0 ENSMUST00000167628.1:-35 ENSMUST00000171601.7:-488
+
|Pals2=
 +
|all_trans=MGI:1927340
 
|chr=chr6
 
|chr=chr6
 
|cpg_percent=0.075
 
|cpg_percent=0.075
 
|distance=0
 
|distance=0
|distance_to_tss=669
+
|distance_to_tss=50
 
|end=50110926
 
|end=50110926
 +
|end_of_center_position=50110911
 
|entrez_id=56524
 
|entrez_id=56524
 
|gc_percent=0.597015
 
|gc_percent=0.597015
|gene_alias=P55t|Pals2
+
|gene_alias=P55t{{!}}Pals2
|gene_description="membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)"
+
|gene_description=membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)
 
|gene_id=56524
 
|gene_id=56524
|gene_name="membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)"
+
|gene_name=membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)
 
|gene_source=MGI:1927340
 
|gene_source=MGI:1927340
 
|gene_symbol=Mpp6
 
|gene_symbol=Mpp6
Line 18: Line 20:
 
|hgnc_mgi_id=MGI:1927340
 
|hgnc_mgi_id=MGI:1927340
 
|nearest_ensembl=ENSMUSG00000038388
 
|nearest_ensembl=ENSMUSG00000038388
|nearest_promoter_id=NM_001164733
+
|nearest_promoter_id=NM_001361247
 
|nearest_refseq=NM_008016
 
|nearest_refseq=NM_008016
 
|nearest_unigene=Mm.41288
 
|nearest_unigene=Mm.41288
|num_trans=5
+
|num_trans=56524
 
|species=mouse
 
|species=mouse
 
|start=50110894
 
|start=50110894
 +
|start_of_center_position=50110910
 
|strand=+
 
|strand=+
|transcript_name=uc009bww.1 AK170481 AK164549
+
|transcript_name=AK164549
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=mm_50620.1
 
|tss_id=mm_50620.1
 
|tss_score=1
 
|tss_score=1
|uniprot_id=Q3TPA2 Q9JLB0
+
|uniprot_id=Q3TPA2
 
}}
 
}}

Latest revision as of 01:31, 28 July 2021

Basic information about the TSS


TSS ID:mm_50620.1
Species:mouse
Chr:chr6
TSS Classification:yes
Start:50110894
End:50110926
Strand:+
TSS Score:1
Start of the center position in the TSS region:50110910
End of the center position in the TSS region:50110911



Gene and protein annotation


Transcript_name:AK164549
Distance:0
GeneID:56524
HGNC/MGI_ID:MGI:1927340
UniProt_ID:Q3TPA2
Gene_name:membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)
Gene_symbol:Mpp6
Gene_synonyms:P55t Pals2
Gene_source:MGI:1927340



Transcript annotation


Transcript_name:AK164549
Distance:0
Num_trans:56524
All_trans:MGI:1927340



TATA-Box annotation


Distance to TSS:50
Nearest PromoterID:NM_001361247
Entrez ID:56524
Nearest Unigene:Mm.41288
Nearest Refseq:NM_008016
Nearest Ensembl:ENSMUSG00000038388
Gene Name:membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)
Gene Alias:P55t|Pals2
Gene Description:membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)
Gene Type:protein-coding
CpG%:0.075
GC%:0.597015
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):