Difference between revisions of "TSS:Hg 103093.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |RbEST47= | ||
| + | |all_trans=HGNC:28435 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
| − | |distance_to_tss= | + | |distance=0 |
| + | |distance_to_tss=-2 | ||
| + | |end=135499895 | ||
| + | |end_of_center_position=135499871 | ||
|entrez_id=138162 | |entrez_id=138162 | ||
|gc_percent=0.711443 | |gc_percent=0.711443 | ||
| − | |gene_alias=PIERCE1 | + | |gene_alias=PIERCE1{{!}}RbEST47 |
|gene_description=chromosome 9 open reading frame 116 | |gene_description=chromosome 9 open reading frame 116 | ||
| − | |gene_name=C9orf116 | + | |gene_id=138162 |
| + | |gene_name=chromosome 9 open reading frame 116 | ||
| + | |gene_source=HGNC:28435 | ||
| + | |gene_symbol=C9orf116 | ||
| + | |gene_synonyms=MGC29761 PIERCE1 RbEST47 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:28435 | ||
|nearest_ensembl=ENSG00000160345 | |nearest_ensembl=ENSG00000160345 | ||
|nearest_promoter_id=NM_144654 | |nearest_promoter_id=NM_144654 | ||
|nearest_refseq=NM_144654 | |nearest_refseq=NM_144654 | ||
|nearest_unigene=Hs.414028 | |nearest_unigene=Hs.414028 | ||
| − | |tata_box= | + | |num_trans=138162 |
| + | |species=human | ||
| + | |start=135499846 | ||
| + | |start_of_center_position=135499870 | ||
| + | |strand=- | ||
| + | |tata_box=-76(GCGCCTTTAAGG,-,0.00),-75(CGCCTTTAAGGC,-,0.00),-74(GCCTTTAAGGCC,+,0.00),-73(CCTTTAAGGCCC,+,0.00) | ||
| + | |transcript_name=ENST00000429260.7 AY927868 DQ892784 DQ896031 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103093.1 | |tss_id=hg_103093.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q5BN46 | ||
}} | }} | ||
Latest revision as of 18:41, 19 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 135499870 |
|---|---|
| End of the center position in the TSS region: | 135499871 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000429260.7 AY927868 DQ892784 DQ896031 |
|---|---|
| Distance: | 0 |
| Num_trans: | 138162 |
| All_trans: | HGNC:28435 |
TATA-Box annotation
| Distance to TSS: | -2 |
|---|---|
| Nearest PromoterID: | NM_144654 |
| Entrez ID: | 138162 |
| Nearest Unigene: | Hs.414028 |
| Nearest Refseq: | NM_144654 |
| Nearest Ensembl: | ENSG00000160345 |
| Gene Name: | chromosome 9 open reading frame 116 |
| Gene Alias: | PIERCE1|RbEST47 |
| Gene Description: | chromosome 9 open reading frame 116 |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.711443 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -76(GCGCCTTTAAGG,-,0.00),-75(CGCCTTTAAGGC,-,0.00),-74(GCCTTTAAGGCC,+,0.00),-73(CCTTTAAGGCCC,+,0.00) |
