Difference between revisions of "TSS:Hg 111087.1"
From referenceTSS
| (2 intermediate revisions by the same user not shown) | |||
| Line 2: | Line 2: | ||
|TD1= | |TD1= | ||
|TDI= | |TDI= | ||
| − | |all_trans= | + | |all_trans=HGNC:37183 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
| Line 8: | Line 8: | ||
|distance_to_tss=7 | |distance_to_tss=7 | ||
|end=101131145 | |end=101131145 | ||
| + | |end_of_center_position=101131140 | ||
|entrez_id=100038246 | |entrez_id=100038246 | ||
|gc_percent=0.577114 | |gc_percent=0.577114 | ||
| − | |gene_alias=APT-B7 | + | |gene_alias=APT-B7{{!}}TD1{{!}}TDI |
|gene_description=TLX1 neighbor | |gene_description=TLX1 neighbor | ||
|gene_id=100038246 | |gene_id=100038246 | ||
| Line 23: | Line 24: | ||
|nearest_refseq=NM_001085398 | |nearest_refseq=NM_001085398 | ||
|nearest_unigene=Hs.368784 | |nearest_unigene=Hs.368784 | ||
| − | |num_trans= | + | |num_trans=100038246 |
|species=human | |species=human | ||
|start=101131133 | |start=101131133 | ||
| + | |start_of_center_position=101131139 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=63(AGGCTTAAAAGG,-,0.00),65(GCTTAAAAGGAA,+,0.00) |
| − | |transcript_name= | + | |transcript_name=BC019674 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_111087.1 | |tss_id=hg_111087.1 | ||
Latest revision as of 21:33, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 101131139 |
|---|---|
| End of the center position in the TSS region: | 101131140 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC019674 |
|---|---|
| Distance: | -1 |
| Num_trans: | 100038246 |
| All_trans: | HGNC:37183 |
TATA-Box annotation
| Distance to TSS: | 7 |
|---|---|
| Nearest PromoterID: | NR_130723 |
| Entrez ID: | 100038246 |
| Nearest Unigene: | Hs.368784 |
| Nearest Refseq: | NM_001085398 |
| Nearest Ensembl: | ENSG00000236311 |
| Gene Name: | TLX1 neighbor |
| Gene Alias: | APT-B7|TD1|TDI |
| Gene Description: | TLX1 neighbor |
| Gene Type: | ncRNA |
| CpG%: | 0.05 |
| GC%: | 0.577114 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 63(AGGCTTAAAAGG,-,0.00),65(GCTTAAAAGGAA,+,0.00) |
