Difference between revisions of "TSS:Mm 6399.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |AW208790= |
| + | |IGFBP-5= | ||
| + | |IGFBP-5P= | ||
| + | |all_trans=LF216477:240 MA452054:240 LF216479:-322 MA452056:-322 BC039192:-415 LF216476:459 MA452053:459 LF216480:-497 MA452057:-497 | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| − | |distance= | + | |distance=240 |
|distance_to_tss=13198 | |distance_to_tss=13198 | ||
|end=72861672 | |end=72861672 | ||
| + | |end_of_center_position=72861667 | ||
|entrez_id=16011 | |entrez_id=16011 | ||
|gc_percent=0.412935 | |gc_percent=0.412935 | ||
| − | |gene_alias=AI256729 | + | |gene_alias=AI256729{{!}}AW208790{{!}}IGFBP-5{{!}}IGFBP-5P |
|gene_description=insulin-like growth factor binding protein 5 | |gene_description=insulin-like growth factor binding protein 5 | ||
|gene_id=16011 | |gene_id=16011 | ||
| − | |gene_name= | + | |gene_name=Igfbp5 |
|gene_source=MGI:96440 | |gene_source=MGI:96440 | ||
|gene_symbol=Igfbp5 | |gene_symbol=Igfbp5 | ||
| Line 21: | Line 25: | ||
|nearest_refseq=NM_010518 | |nearest_refseq=NM_010518 | ||
|nearest_unigene=Mm.405761 | |nearest_unigene=Mm.405761 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=mouse | |species=mouse | ||
|start=72861661 | |start=72861661 | ||
| + | |start_of_center_position=72861666 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF216477 MA452054 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_6399.1 | |tss_id=mm_6399.1 | ||
Latest revision as of 14:29, 21 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 72861666 |
|---|---|
| End of the center position in the TSS region: | 72861667 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF216477 MA452054 |
|---|---|
| Distance: | 240 |
| Num_trans: | 9 |
| All_trans: | LF216477:240 MA452054:240 LF216479:-322 MA452056:-322 BC039192:-415 LF216476:459 MA452053:459 LF216480:-497 MA452057:-497 |
TATA-Box annotation
| Distance to TSS: | 13198 |
|---|---|
| Nearest PromoterID: | NM_010518 |
| Entrez ID: | 16011 |
| Nearest Unigene: | Mm.405761 |
| Nearest Refseq: | NM_010518 |
| Nearest Ensembl: | ENSMUSG00000026185 |
| Gene Name: | Igfbp5 |
| Gene Alias: | AI256729|AW208790|IGFBP-5|IGFBP-5P |
| Gene Description: | insulin-like growth factor binding protein 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.412935 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
