Difference between revisions of "TSS:Mm 6412.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | | | + | |AW208790= |
| + | |IGFBP-5= | ||
| + | |IGFBP-5P= | ||
| + | |all_trans=MGI:96440 | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| Line 6: | Line 9: | ||
|distance_to_tss=322 | |distance_to_tss=322 | ||
|end=72874547 | |end=72874547 | ||
| + | |end_of_center_position=72874543 | ||
|entrez_id=16011 | |entrez_id=16011 | ||
|gc_percent=0.507463 | |gc_percent=0.507463 | ||
| − | |gene_alias=AI256729 | + | |gene_alias=AI256729{{!}}AW208790{{!}}IGFBP-5{{!}}IGFBP-5P |
|gene_description=insulin-like growth factor binding protein 5 | |gene_description=insulin-like growth factor binding protein 5 | ||
|gene_id=16011 | |gene_id=16011 | ||
| Line 21: | Line 25: | ||
|nearest_refseq=NM_010518 | |nearest_refseq=NM_010518 | ||
|nearest_unigene=Mm.405761 | |nearest_unigene=Mm.405761 | ||
| − | |num_trans= | + | |num_trans=16011 |
|species=mouse | |species=mouse | ||
|start=72874538 | |start=72874538 | ||
| + | |start_of_center_position=72874542 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=37(CCTTTTCAAGGC,+,0.00) |
|transcript_name=L12447 | |transcript_name=L12447 | ||
|tss_classification=yes | |tss_classification=yes | ||
Latest revision as of 06:32, 28 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 72874542 |
|---|---|
| End of the center position in the TSS region: | 72874543 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | L12447 |
|---|---|
| Distance: | 14 |
| Num_trans: | 16011 |
| All_trans: | MGI:96440 |
TATA-Box annotation
| Distance to TSS: | 322 |
|---|---|
| Nearest PromoterID: | NM_010518 |
| Entrez ID: | 16011 |
| Nearest Unigene: | Mm.405761 |
| Nearest Refseq: | NM_010518 |
| Nearest Ensembl: | ENSMUSG00000026185 |
| Gene Name: | insulin-like growth factor binding protein 5 |
| Gene Alias: | AI256729|AW208790|IGFBP-5|IGFBP-5P |
| Gene Description: | insulin-like growth factor binding protein 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.507463 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 37(CCTTTTCAAGGC,+,0.00) |
