Difference between revisions of "TSS:Hg 103285.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=HGNC:32 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.22 | |cpg_percent=0.22 | ||
| − | |distance_to_tss=- | + | |distance=19 |
| + | |distance_to_tss=-75 | ||
| + | |end=137028317 | ||
| + | |end_of_center_position=137028312 | ||
|entrez_id=20 | |entrez_id=20 | ||
|gc_percent=0.870647 | |gc_percent=0.870647 | ||
|gene_alias=ABC2 | |gene_alias=ABC2 | ||
|gene_description=ATP binding cassette subfamily A member 2 | |gene_description=ATP binding cassette subfamily A member 2 | ||
| − | |gene_name=ABCA2 | + | |gene_id=20 |
| + | |gene_name=ATP binding cassette subfamily A member 2 | ||
| + | |gene_source=HGNC:32 | ||
| + | |gene_symbol=ABCA2 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:32 | ||
|nearest_ensembl=ENSG00000107331 | |nearest_ensembl=ENSG00000107331 | ||
|nearest_promoter_id=NM_001606 | |nearest_promoter_id=NM_001606 | ||
|nearest_refseq=NM_001606 | |nearest_refseq=NM_001606 | ||
|nearest_unigene=Hs.421202 | |nearest_unigene=Hs.421202 | ||
| − | |tata_box= | + | |num_trans=20 |
| + | |species=human | ||
| + | |start=137028306 | ||
| + | |start_of_center_position=137028311 | ||
| + | |strand=- | ||
| + | |tata_box=-33(GCGCCTTTAAGC,-,0.00),-31(GCCTTTAAGCGG,+,0.00) | ||
| + | |transcript_name=ENST00000265662.9 ENST00000371605.7 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103285.1 | |tss_id=hg_103285.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=J3QSS3 Q9BZC7 | ||
}} | }} | ||
Latest revision as of 18:45, 19 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 137028311 |
|---|---|
| End of the center position in the TSS region: | 137028312 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000265662.9 ENST00000371605.7 |
|---|---|
| Distance: | 19 |
| Num_trans: | 20 |
| All_trans: | HGNC:32 |
TATA-Box annotation
| Distance to TSS: | -75 |
|---|---|
| Nearest PromoterID: | NM_001606 |
| Entrez ID: | 20 |
| Nearest Unigene: | Hs.421202 |
| Nearest Refseq: | NM_001606 |
| Nearest Ensembl: | ENSG00000107331 |
| Gene Name: | ATP binding cassette subfamily A member 2 |
| Gene Alias: | ABC2 |
| Gene Description: | ATP binding cassette subfamily A member 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.22 |
| GC%: | 0.870647 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -33(GCGCCTTTAAGC,-,0.00),-31(GCCTTTAAGCGG,+,0.00) |
