Difference between revisions of "TSS:Mm 78317.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000098926.2:0 AK144276:0 |chr=chr9 |cpg_percent=0.005 |distance=0 |distance_to_tss=161482 |end=24341663 |entrez_id=244745 |gc_percent=0.447761...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |6030402K12= |
| + | |AI225861= | ||
| + | |AW558481= | ||
| + | |all_trans=MGI:3642532 | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| Line 6: | Line 9: | ||
|distance_to_tss=161482 | |distance_to_tss=161482 | ||
|end=24341663 | |end=24341663 | ||
| + | |end_of_center_position=24341659 | ||
|entrez_id=244745 | |entrez_id=244745 | ||
|gc_percent=0.447761 | |gc_percent=0.447761 | ||
| − | |gene_alias=1100001I19Rik | + | |gene_alias=1100001I19Rik{{!}}6030402K12{{!}}AI225861{{!}}AW558481 |
|gene_description=dpy-19-like 1 (C. elegans) | |gene_description=dpy-19-like 1 (C. elegans) | ||
|gene_id=100038418 | |gene_id=100038418 | ||
| Line 18: | Line 22: | ||
|hgnc_mgi_id=MGI:3642532 | |hgnc_mgi_id=MGI:3642532 | ||
|nearest_ensembl=ENSMUSG00000043067 | |nearest_ensembl=ENSMUSG00000043067 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001359948 |
|nearest_refseq=NM_172920 | |nearest_refseq=NM_172920 | ||
|nearest_unigene=Mm.38526 | |nearest_unigene=Mm.38526 | ||
| − | |num_trans= | + | |num_trans=100038418 |
|species=mouse | |species=mouse | ||
|start=24341653 | |start=24341653 | ||
| + | |start_of_center_position=24341658 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=9(GGCGTTTAAAGG,-,0.00),10(GCGTTTAAAGGA,-,0.00) |
|transcript_name=ENSMUST00000098926.2 AK144276 | |transcript_name=ENSMUST00000098926.2 AK144276 | ||
|tss_classification=no | |tss_classification=no | ||
Latest revision as of 11:44, 28 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 24341658 |
|---|---|
| End of the center position in the TSS region: | 24341659 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000098926.2 AK144276 |
|---|---|
| Distance: | 0 |
| Num_trans: | 100038418 |
| All_trans: | MGI:3642532 |
TATA-Box annotation
| Distance to TSS: | 161482 |
|---|---|
| Nearest PromoterID: | NM_001359948 |
| Entrez ID: | 244745 |
| Nearest Unigene: | Mm.38526 |
| Nearest Refseq: | NM_172920 |
| Nearest Ensembl: | ENSMUSG00000043067 |
| Gene Name: | predicted gene 10701 |
| Gene Alias: | 1100001I19Rik|6030402K12|AI225861|AW558481 |
| Gene Description: | dpy-19-like 1 (C. elegans) |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.447761 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 9(GGCGTTTAAAGG,-,0.00),10(GCGTTTAAAGGA,-,0.00) |
