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Difference between revisions of "TSS:Mm 99427.1"

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(Created page with "{{TSSDetail |all_trans=ENSMUST00000132876.1:32 ENSMUST00000131219.1:-60 ENSMUST00000142157.7:-252 |chr=chr11 |cpg_percent=0.085 |distance=32 |distance_to_tss=5166 |end=1023998...")
 
 
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{{TSSDetail
 
{{TSSDetail
|all_trans=ENSMUST00000132876.1:32 ENSMUST00000131219.1:-60 ENSMUST00000142157.7:-252
+
|all_trans=MGI:1858752
 
|chr=chr11
 
|chr=chr11
 
|cpg_percent=0.085
 
|cpg_percent=0.085
Line 6: Line 6:
 
|distance_to_tss=5166
 
|distance_to_tss=5166
 
|end=102399826
 
|end=102399826
 +
|end_of_center_position=102399821
 
|entrez_id=102465561
 
|entrez_id=102465561
 
|gc_percent=0.681592
 
|gc_percent=0.681592
|gene_alias=Gm27436|mmu-mir-6930
+
|gene_alias=Gm27436{{!}}mmu-mir-6930
 
|gene_description=microRNA 6930
 
|gene_description=microRNA 6930
 
|gene_id=51799
 
|gene_id=51799
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|gene_type=ncRNA
 
|gene_type=ncRNA
 
|hgnc_mgi_id=MGI:1858752
 
|hgnc_mgi_id=MGI:1858752
 +
|mmu-mir-6930=
 
|nearest_ensembl=ENSMUSG00000098774
 
|nearest_ensembl=ENSMUSG00000098774
 
|nearest_promoter_id=NR_105895
 
|nearest_promoter_id=NR_105895
 
|nearest_refseq=NR_105895
 
|nearest_refseq=NR_105895
 
|nearest_unigene=
 
|nearest_unigene=
|num_trans=3
+
|num_trans=51799
 
|species=mouse
 
|species=mouse
 
|start=102399815
 
|start=102399815
 +
|start_of_center_position=102399820
 
|strand=+
 
|strand=+
 
|transcript_name=ENSMUST00000132876.1
 
|transcript_name=ENSMUST00000132876.1

Latest revision as of 19:26, 28 July 2021

Basic information about the TSS


TSS ID:mm_99427.1
Species:mouse
Chr:chr11
TSS Classification:yes
Start:102399815
End:102399826
Strand:+
TSS Score:1
Start of the center position in the TSS region:102399820
End of the center position in the TSS region:102399821



Gene and protein annotation


Transcript_name:ENSMUST00000132876.1
Distance:32
GeneID:51799
HGNC/MGI_ID:MGI:1858752
UniProt_ID:
Gene_name:RUN domain containing 3A
Gene_symbol:Rundc3a
Gene_synonyms:Rap2ip Rpip8
Gene_source:MGI:1858752



Transcript annotation


Transcript_name:ENSMUST00000132876.1
Distance:32
Num_trans:51799
All_trans:MGI:1858752



TATA-Box annotation


Distance to TSS:5166
Nearest PromoterID:NR_105895
Entrez ID:102465561
Nearest Unigene:
Nearest Refseq:NR_105895
Nearest Ensembl:ENSMUSG00000098774
Gene Name:RUN domain containing 3A
Gene Alias:Gm27436|mmu-mir-6930
Gene Description:microRNA 6930
Gene Type:ncRNA
CpG%:0.085
GC%:0.681592
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):