Difference between revisions of "TSS:Mm 99561.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000154471.7:384 ENSMUST00000129780.1:384 NR_102388:384 NR_102389:384 NR_102396:384 uc033gau.1:384 uc007lvp.1:384 uc033gav.1:384 AK165205:384 AK...") |
|||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |C76855= |
| + | |Gs27= | ||
| + | |SNARE= | ||
| + | |all_trans=MGI:3026935 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
|distance=384 | |distance=384 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-277 |
|end=103697340 | |end=103697340 | ||
| + | |end_of_center_position=103697331 | ||
|entrez_id=56494 | |entrez_id=56494 | ||
|gc_percent=0.472637 | |gc_percent=0.472637 | ||
| − | |gene_alias=2310032N09Rik | + | |gene_alias=2310032N09Rik{{!}}C76855{{!}}Gs27{{!}}SNARE{{!}}membrin |
|gene_description=golgi SNAP receptor complex member 2 | |gene_description=golgi SNAP receptor complex member 2 | ||
|gene_id=399609 | |gene_id=399609 | ||
| Line 17: | Line 21: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:3026935 | |hgnc_mgi_id=MGI:3026935 | ||
| + | |membrin= | ||
|nearest_ensembl=ENSMUSG00000020946 | |nearest_ensembl=ENSMUSG00000020946 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001362856 |
|nearest_refseq=NM_019650 | |nearest_refseq=NM_019650 | ||
|nearest_unigene=Mm.195451 | |nearest_unigene=Mm.195451 | ||
| − | |num_trans= | + | |num_trans=399609 |
|species=mouse | |species=mouse | ||
|start=103697321 | |start=103697321 | ||
| + | |start_of_center_position=103697330 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENSMUST00000154471.7 ENSMUST00000129780 | + | |transcript_name=ENSMUST00000154471.7 ENSMUST00000129780.1 AK165205 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_99561.1 | |tss_id=mm_99561.1 | ||
Latest revision as of 19:28, 28 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 103697330 |
|---|---|
| End of the center position in the TSS region: | 103697331 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000154471.7 ENSMUST00000129780.1 AK165205 |
|---|---|
| Distance: | 384 |
| Num_trans: | 399609 |
| All_trans: | MGI:3026935 |
TATA-Box annotation
| Distance to TSS: | -277 |
|---|---|
| Nearest PromoterID: | NM_001362856 |
| Entrez ID: | 56494 |
| Nearest Unigene: | Mm.195451 |
| Nearest Refseq: | NM_019650 |
| Nearest Ensembl: | ENSMUSG00000020946 |
| Gene Name: | RIKEN cDNA C130046K22 gene |
| Gene Alias: | 2310032N09Rik|C76855|Gs27|SNARE|membrin |
| Gene Description: | golgi SNAP receptor complex member 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.472637 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
