Difference between revisions of "TSS:Mm 99709.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=AK169816:5 AK021013:41 ENSMUST00000021046.5:-46 NM_028074:-46 uc007lyk.2:-46 uc007lyl.2:-46 AK049311:-46 AK171730:85 AK134182:135 |chr=chr11 |cpg_percen...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |AW319508= |
| + | |AW556242= | ||
| + | |B430002H05Rik= | ||
| + | |RHELP= | ||
| + | |RNAHP= | ||
| + | |SF3b125= | ||
| + | |all_trans=MGI:1919297 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.14 | |cpg_percent=0.14 | ||
| Line 6: | Line 12: | ||
|distance_to_tss=48 | |distance_to_tss=48 | ||
|end=106216976 | |end=106216976 | ||
| + | |end_of_center_position=106216974 | ||
|entrez_id=72047 | |entrez_id=72047 | ||
|gc_percent=0.721393 | |gc_percent=0.721393 | ||
| − | |gene_alias=1810047H21Rik | + | |gene_alias=1810047H21Rik{{!}}AW319508{{!}}AW556242{{!}}B430002H05Rik{{!}}RHELP{{!}}RNAHP{{!}}SF3b125 |
|gene_description=DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 | |gene_description=DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 | ||
|gene_id=72047 | |gene_id=72047 | ||
| − | |gene_name=DEAD | + | |gene_name=DEAD box helicase 42 |
|gene_source=MGI:1919297 | |gene_source=MGI:1919297 | ||
|gene_symbol=Ddx42 | |gene_symbol=Ddx42 | ||
| − | |gene_synonyms=1810047H21Rik B430002H05Rik SF3b125 | + | |gene_synonyms=1810047H21Rik B430002H05Rik DEAD_(Asp-Glu-Ala-Asp)_box_polypeptide_42 SF3b125 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:1919297 | |hgnc_mgi_id=MGI:1919297 | ||
| Line 21: | Line 28: | ||
|nearest_refseq=NM_028074 | |nearest_refseq=NM_028074 | ||
|nearest_unigene=Mm.41367 | |nearest_unigene=Mm.41367 | ||
| − | |num_trans= | + | |num_trans=72047 |
|species=mouse | |species=mouse | ||
|start=106216971 | |start=106216971 | ||
| + | |start_of_center_position=106216973 | ||
|strand=+ | |strand=+ | ||
|transcript_name=AK169816 | |transcript_name=AK169816 | ||
Latest revision as of 19:32, 28 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 106216973 |
|---|---|
| End of the center position in the TSS region: | 106216974 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK169816 |
|---|---|
| Distance: | 5 |
| Num_trans: | 72047 |
| All_trans: | MGI:1919297 |
TATA-Box annotation
| Distance to TSS: | 48 |
|---|---|
| Nearest PromoterID: | NM_028074 |
| Entrez ID: | 72047 |
| Nearest Unigene: | Mm.41367 |
| Nearest Refseq: | NM_028074 |
| Nearest Ensembl: | ENSMUSG00000020705 |
| Gene Name: | DEAD box helicase 42 |
| Gene Alias: | 1810047H21Rik|AW319508|AW556242|B430002H05Rik|RHELP|RNAHP|SF3b125 |
| Gene Description: | DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 |
| Gene Type: | protein-coding |
| CpG%: | 0.14 |
| GC%: | 0.721393 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
