Difference between revisions of "TSS:Mm 99788.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000136927.1:35 uc007maq.1:35 AK146139:35 |chr=chr11 |cpg_percent=0.015 |distance=35 |distance_to_tss=42484 |end=107428241 |entrez_id=71795 |gc_...") |
|||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |5830436L09Rik= |
| + | |AI662802= | ||
| + | |AI851387= | ||
| + | |C330017I21Rik= | ||
| + | |Dnr411= | ||
| + | |RDGBB= | ||
| + | |RDGBB1= | ||
| + | |all_trans=MGI:3649214 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| Line 6: | Line 13: | ||
|distance_to_tss=42484 | |distance_to_tss=42484 | ||
|end=107428241 | |end=107428241 | ||
| + | |end_of_center_position=107428237 | ||
|entrez_id=71795 | |entrez_id=71795 | ||
|gc_percent=0.477612 | |gc_percent=0.477612 | ||
| − | |gene_alias=1110020B03Rik | + | |gene_alias=1110020B03Rik{{!}}5830436L09Rik{{!}}AI662802{{!}}AI851387{{!}}C330017I21Rik{{!}}Dnr411{{!}}RDGBB{{!}}RDGBB1{{!}}mrdgBbeta{{!}}rdgB-beta |
| − | |gene_description= | + | |gene_description=phosphatidylinositol transfer protein, cytoplasmic 1 |
| − | |gene_id= | + | |gene_id=108167930 |
|gene_name=predicted gene 11714 | |gene_name=predicted gene 11714 | ||
|gene_source=MGI:3649214 | |gene_source=MGI:3649214 | ||
| Line 18: | Line 26: | ||
|hgnc_mgi_id=MGI:3649214 | |hgnc_mgi_id=MGI:3649214 | ||
|nearest_ensembl=ENSMUSG00000040430 | |nearest_ensembl=ENSMUSG00000040430 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001359616 |
|nearest_refseq=NM_145823 | |nearest_refseq=NM_145823 | ||
|nearest_unigene=Mm.397413 | |nearest_unigene=Mm.397413 | ||
| − | |num_trans= | + | |num_trans=108167930 |
| + | |rdgB-beta= | ||
|species=mouse | |species=mouse | ||
|start=107428231 | |start=107428231 | ||
| + | |start_of_center_position=107428236 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENSMUST00000136927 | + | |transcript_name=ENSMUST00000136927.1 AK146139 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_99788.1 | |tss_id=mm_99788.1 | ||
Latest revision as of 19:33, 28 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 107428236 |
|---|---|
| End of the center position in the TSS region: | 107428237 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000136927.1 AK146139 |
|---|---|
| Distance: | 35 |
| Num_trans: | 108167930 |
| All_trans: | MGI:3649214 |
TATA-Box annotation
| Distance to TSS: | 42484 |
|---|---|
| Nearest PromoterID: | NM_001359616 |
| Entrez ID: | 71795 |
| Nearest Unigene: | Mm.397413 |
| Nearest Refseq: | NM_145823 |
| Nearest Ensembl: | ENSMUSG00000040430 |
| Gene Name: | predicted gene 11714 |
| Gene Alias: | 1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta |
| Gene Description: | phosphatidylinositol transfer protein, cytoplasmic 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.477612 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
