Difference between revisions of "Template:TSSDetail"
From referenceTSS
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<html><style> | <html><style> | ||
table { | table { | ||
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text-align:left; | text-align:left; | ||
width:270px; | width:270px; | ||
| + | word-wrap:break-word; | ||
| + | } | ||
| + | .item_label_long2 { | ||
| + | text-align:left; | ||
| + | width:350px; | ||
word-wrap:break-word; | word-wrap:break-word; | ||
} | } | ||
| Line 48: | Line 52: | ||
</table> | </table> | ||
</td></tr> | </td></tr> | ||
| + | </table> | ||
| + | <table class="inner" width="420px"> | ||
| + | <tr><th scope="row" class="item_label_long2">Start of the center position in the TSS region:</th><td>{{{start_of_center_position|}}}</td></tr> | ||
| + | <tr><th scope="row" class="item_label_long2">End of the center position in the TSS region:</th><td>{{{end_of_center_position|}}}</td></tr> | ||
</table> | </table> | ||
<br/> | <br/> | ||
| Line 53: | Line 61: | ||
<span class="section_head">Gene and protein annotation</span> | <span class="section_head">Gene and protein annotation</span> | ||
<hr width="270px" size="2" style="text-align:left;margin-left:0" noshade> | <hr width="270px" size="2" style="text-align:left;margin-left:0" noshade> | ||
| − | <table border="0" style="width: | + | <table border="0" style="width:560px"><tr><td style="width:36%;"> |
<table class="inner" > | <table class="inner" > | ||
<tr><th scope="row" align="left">Transcript_name:</th><td>{{{transcript_name|}}}</td></tr> | <tr><th scope="row" align="left">Transcript_name:</th><td>{{{transcript_name|}}}</td></tr> | ||
<tr><th scope="row" align="left">Distance:</th><td>{{{distance|}}}</td></tr> | <tr><th scope="row" align="left">Distance:</th><td>{{{distance|}}}</td></tr> | ||
| − | <tr><th scope="row" align="left">GeneID:</th><td>{{{gene_id|}}}</td></tr> | + | <tr><th scope="row" align="left">GeneID:</th><td>{{#if:{{{gene_id|}}}|[[EntrezGene:{{{gene_id|}}}|{{{gene_id}}}]]|}}</td></tr> |
<tr><th scope="row" align="left">HGNC/MGI_ID:</th><td>{{{hgnc_mgi_id|}}}</td></tr> | <tr><th scope="row" align="left">HGNC/MGI_ID:</th><td>{{{hgnc_mgi_id|}}}</td></tr> | ||
<tr><th scope="row" align="left">UniProt_ID:</th><td>{{{uniprot_id|}}}</td></tr> | <tr><th scope="row" align="left">UniProt_ID:</th><td>{{{uniprot_id|}}}</td></tr> | ||
| − | </table></td><td style="width:4%;"></td><td style="width: | + | </table></td><td style="width:4%;"></td><td style="width:60%;"> |
<table class="inner" > | <table class="inner" > | ||
<tr><th scope="row" align="left">Gene_name:</th><td>{{{gene_name|}}}</td></tr> | <tr><th scope="row" align="left">Gene_name:</th><td>{{{gene_name|}}}</td></tr> | ||
| Line 97: | Line 105: | ||
<tr><th scope="row" class="item_label_long">TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):</th><td class="ttb">{{{tata_box|}}}</td></tr> | <tr><th scope="row" class="item_label_long">TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):</th><td class="ttb">{{{tata_box|}}}</td></tr> | ||
</table> | </table> | ||
| + | |||
{{#set:tss_id={{{tss_id}}}}} | {{#set:tss_id={{{tss_id}}}}} | ||
{{#set:species={{{species}}}}} | {{#set:species={{{species}}}}} | ||
| Line 118: | Line 127: | ||
{{#set:uniprot_id={{{uniprot_id}}}}} | {{#set:uniprot_id={{{uniprot_id}}}}} | ||
{{#set:gene_name={{{gene_name}}}}} | {{#set:gene_name={{{gene_name}}}}} | ||
| − | {{#set:gene_symbol={{{gene_symbol}}}}} | + | {{#set:gene_symbol={{{gene_symbol|}}}}} |
{{#set:gene_synonyms={{{gene_synonyms}}}}} | {{#set:gene_synonyms={{{gene_synonyms}}}}} | ||
{{#set:gene_source={{{gene_source}}}}} | {{#set:gene_source={{{gene_source}}}}} | ||
Latest revision as of 16:37, 29 July 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | |
| Num_trans: | |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | |
|---|---|
| Nearest PromoterID: | |
| Entrez ID: | |
| Nearest Unigene: | |
| Nearest Refseq: | |
| Nearest Ensembl: | |
| Gene Name: | |
| Gene Alias: | |
| Gene Description: | |
| Gene Type: | |
| CpG%: | |
| GC%: | |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
"{{{cpg_percent}}}" is not a number. "{{{gc_percent}}}" is not a number.
"{{{start}}}" is not a number.
"{{{end}}}" is not a number.
"{{{tss_score}}}" is not a number.
"{{{num_trans}}}" is not a number.
