Difference between revisions of "TSS:Hg 104072.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.015 |distance_to_tss=-5830 |entrez_id=100507347 |gc_percent=0.353234 |gene_alias=- |gene_description=VIM antisense RNA 1 |gene_name=VIM-AS1 |gene_ty...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=LF346187:25 MA581764:25 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| + | |distance=25 | ||
|distance_to_tss=-5830 | |distance_to_tss=-5830 | ||
| + | |end=17235820 | ||
| + | |end_of_center_position=17235815 | ||
|entrez_id=100507347 | |entrez_id=100507347 | ||
|gc_percent=0.353234 | |gc_percent=0.353234 | ||
| Line 12: | Line 17: | ||
|nearest_refseq=NR_108060 | |nearest_refseq=NR_108060 | ||
|nearest_unigene=Hs.740502 | |nearest_unigene=Hs.740502 | ||
| + | |num_trans=2 | ||
| + | |species=human | ||
| + | |start=17235809 | ||
| + | |start_of_center_position=17235814 | ||
| + | |strand=+ | ||
| + | |transcript_name=LF346187 MA581764 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104072.1 | |tss_id=hg_104072.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 18:58, 12 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 17235814 |
|---|---|
| End of the center position in the TSS region: | 17235815 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | LF346187 MA581764 |
|---|---|
| Distance: | 25 |
| Num_trans: | 2 |
| All_trans: | LF346187:25 MA581764:25 |
TATA-Box annotation
| Distance to TSS: | -5830 |
|---|---|
| Nearest PromoterID: | NR_108061 |
| Entrez ID: | 100507347 |
| Nearest Unigene: | Hs.740502 |
| Nearest Refseq: | NR_108060 |
| Nearest Ensembl: | ENSG00000229124 |
| Gene Name: | VIM-AS1 |
| Gene Alias: | - |
| Gene Description: | VIM antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.015 |
| GC%: | 0.353234 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
