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Difference between revisions of "TSS:Hg 104081.1"

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(Created page with "{{TSSDetail |cpg_percent=0.005 |distance_to_tss=-7501 |entrez_id=100507347 |gc_percent=0.303483 |gene_alias=- |gene_description=VIM antisense RNA 1 |gene_name=VIM-AS1 |gene_ty...")
 
 
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{{TSSDetail
 
{{TSSDetail
 +
|all_trans=LF346189:-141 MA581766:-141 LF346188:-224 MA581765:-224
 +
|chr=chr10
 
|cpg_percent=0.005
 
|cpg_percent=0.005
 +
|distance=-141
 
|distance_to_tss=-7501
 
|distance_to_tss=-7501
 +
|end=17237491
 +
|end_of_center_position=17237486
 
|entrez_id=100507347
 
|entrez_id=100507347
 
|gc_percent=0.303483
 
|gc_percent=0.303483
Line 12: Line 17:
 
|nearest_refseq=NR_108060
 
|nearest_refseq=NR_108060
 
|nearest_unigene=Hs.740502
 
|nearest_unigene=Hs.740502
|tata_box="8(CTTTTTAAAAGG,+,0.00),8(CTTTTTAAAAGG,-,0.00)"
+
|num_trans=4
 +
|species=human
 +
|start=17237480
 +
|start_of_center_position=17237485
 +
|strand=+
 +
|tata_box=8(CTTTTTAAAAGG,+,0.00),8(CTTTTTAAAAGG,-,0.00)
 +
|transcript_name=LF346189 MA581766
 +
|tss_classification=no
 
|tss_id=hg_104081.1
 
|tss_id=hg_104081.1
 +
|tss_score=1
 
}}
 
}}

Latest revision as of 17:42, 15 June 2021

Basic information about the TSS


TSS ID:hg_104081.1
Species:human
Chr:chr10
TSS Classification:no
Start:17237480
End:17237491
Strand:+
TSS Score:1
Start of the center position in the TSS region:17237485
End of the center position in the TSS region:17237486



Gene and protein annotation


Transcript_name:LF346189 MA581766
Distance:-141
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Gene_name:VIM-AS1
Gene_symbol:
Gene_synonyms:
Gene_source:



Transcript annotation


Transcript_name:LF346189 MA581766
Distance:-141
Num_trans:4
All_trans:LF346189:-141 MA581766:-141 LF346188:-224 MA581765:-224



TATA-Box annotation


Distance to TSS:-7501
Nearest PromoterID:NR_108061
Entrez ID:100507347
Nearest Unigene:Hs.740502
Nearest Refseq:NR_108060
Nearest Ensembl:ENSG00000229124
Gene Name:VIM-AS1
Gene Alias:-
Gene Description:VIM antisense RNA 1
Gene Type:ncRNA
CpG%:0.005
GC%:0.303483
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):8(CTTTTTAAAAGG,+,0.00),8(CTTTTTAAAAGG,-,0.00)