Difference between revisions of "TSS:Hg 12230.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=NM_003189:1 NM_001290406:1 NM_001290403:1 ENST00000464796.5:116 uc001cqz.2:116 S53678:116 S53686:116 NM_001290405:447 NM_001290404:447 |chr=chr1 |cpg_pe...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=NM_003189:1 NM_001290406: | + | |TCL5= |
| + | |all_trans=NM_001290403:1 NM_003189:1 NM_001290406:111 ENST00000464796.5:116 S53678:116 S53686:116 NM_001290405:447 NM_001290404:447 | ||
| + | |bHLHa17= | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=-6 | |distance_to_tss=-6 | ||
|end=47232347 | |end=47232347 | ||
| + | |end_of_center_position=47232342 | ||
|entrez_id=6886 | |entrez_id=6886 | ||
|gc_percent=0.706468 | |gc_percent=0.706468 | ||
| − | |gene_alias=SCL | + | |gene_alias=SCL{{!}}TCL5{{!}}bHLHa17{{!}}tal-1 |
| − | |gene_description= | + | |gene_description=TAL bHLH transcription factor 1, erythroid differentiation factor |
|gene_id=6886 | |gene_id=6886 | ||
| − | |gene_name= | + | |gene_name=TAL bHLH transcription factor 1, erythroid differentiation factor |
|gene_source=HGNC:11556 | |gene_source=HGNC:11556 | ||
|gene_symbol=TAL1 | |gene_symbol=TAL1 | ||
| Line 21: | Line 24: | ||
|nearest_refseq=NM_003189 | |nearest_refseq=NM_003189 | ||
|nearest_unigene=Hs.705618 | |nearest_unigene=Hs.705618 | ||
| − | |num_trans= | + | |num_trans=8 |
|species=human | |species=human | ||
|start=47232335 | |start=47232335 | ||
| + | |start_of_center_position=47232341 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=NM_003189 | + | |tal-1= |
| + | |transcript_name=NM_003189.5 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_12230.1 | |tss_id=hg_12230.1 | ||
Latest revision as of 01:39, 20 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 47232341 |
|---|---|
| End of the center position in the TSS region: | 47232342 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_003189.5 |
|---|---|
| Distance: | 1 |
| Num_trans: | 8 |
| All_trans: | NM_001290403:1 NM_003189:1 NM_001290406:111 ENST00000464796.5:116 S53678:116 S53686:116 NM_001290405:447 NM_001290404:447 |
TATA-Box annotation
| Distance to TSS: | -6 |
|---|---|
| Nearest PromoterID: | NM_001290403 |
| Entrez ID: | 6886 |
| Nearest Unigene: | Hs.705618 |
| Nearest Refseq: | NM_003189 |
| Nearest Ensembl: | ENSG00000162367 |
| Gene Name: | TAL bHLH transcription factor 1, erythroid differentiation factor |
| Gene Alias: | SCL|TCL5|bHLHa17|tal-1 |
| Gene Description: | TAL bHLH transcription factor 1, erythroid differentiation factor |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.706468 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
