Difference between revisions of "TSS:Hg 104261.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans= | ||
| + | |chr=chr10 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
| + | |distance=68 | ||
|distance_to_tss=922 | |distance_to_tss=922 | ||
| + | |end=22437012 | ||
| + | |end_of_center_position=22437007 | ||
|entrez_id=100499489 | |entrez_id=100499489 | ||
|gc_percent=0.671642 | |gc_percent=0.671642 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=uncharacterized LOC100499489 | |gene_description=uncharacterized LOC100499489 | ||
| + | |gene_id= | ||
|gene_name=LOC100499489 | |gene_name=LOC100499489 | ||
| + | |gene_source=EntrezGene:100289455 | ||
| + | |gene_symbol=LOC100289455 | ||
| + | |gene_synonyms= | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NR_036533 | |nearest_promoter_id=NR_036533 | ||
|nearest_refseq=NR_036533 | |nearest_refseq=NR_036533 | ||
|nearest_unigene=Hs.7444 | |nearest_unigene=Hs.7444 | ||
| − | |tata_box= | + | |num_trans= |
| + | |species=human | ||
| + | |start=22437001 | ||
| + | |start_of_center_position=22437006 | ||
| + | |strand=+ | ||
| + | |tata_box=-50(GGCTCTATAAAG,-,0.00),-48(CTCTATAAAGCC,+,0.00),-34(GGCTCTATAAAG,-,0.00),-32(CTCTATAAAGCC,+,0.00) | ||
| + | |transcript_name=AK295718 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104261.1 | |tss_id=hg_104261.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B7Z3C9 | ||
}} | }} | ||
Latest revision as of 19:06, 19 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 22437006 |
|---|---|
| End of the center position in the TSS region: | 22437007 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AK295718 |
|---|---|
| Distance: | 68 |
| Num_trans: | |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | 922 |
|---|---|
| Nearest PromoterID: | NR_036533 |
| Entrez ID: | 100499489 |
| Nearest Unigene: | Hs.7444 |
| Nearest Refseq: | NR_036533 |
| Nearest Ensembl: | |
| Gene Name: | LOC100499489 |
| Gene Alias: | - |
| Gene Description: | uncharacterized LOC100499489 |
| Gene Type: | ncRNA |
| CpG%: | 0.135 |
| GC%: | 0.671642 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -50(GGCTCTATAAAG,-,0.00),-48(CTCTATAAAGCC,+,0.00),-34(GGCTCTATAAAG,-,0.00),-32(CTCTATAAAGCC,+,0.00) |
