Difference between revisions of "TSS:Hg 104349.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.035 |distance_to_tss=7359 |entrez_id=56243 |gc_percent=0.58209 |gene_alias=SKT |gene_description=KIAA1217 |gene_name=KIAA1217 |gene_type=protein-cod...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=KJ902903:-464 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| − | |distance_to_tss= | + | |distance=-464 |
| + | |distance_to_tss=7333 | ||
| + | |end=24473872 | ||
| + | |end_of_center_position=24473864 | ||
|entrez_id=56243 | |entrez_id=56243 | ||
|gc_percent=0.58209 | |gc_percent=0.58209 | ||
| − | |gene_alias=SKT | + | |gene_alias=ETL4{{!}}SKT |
|gene_description=KIAA1217 | |gene_description=KIAA1217 | ||
|gene_name=KIAA1217 | |gene_name=KIAA1217 | ||
| Line 12: | Line 17: | ||
|nearest_refseq=NM_019590 | |nearest_refseq=NM_019590 | ||
|nearest_unigene=Hs.445885 | |nearest_unigene=Hs.445885 | ||
| − | |tata_box= | + | |num_trans=1 |
| + | |species=human | ||
| + | |start=24473855 | ||
| + | |start_of_center_position=24473863 | ||
| + | |strand=+ | ||
| + | |tata_box=44(GGCCTTTAAAAA,-,0.00),45(GCCTTTAAAAAG,-,0.00),46(CCTTTAAAAAGG,+,0.00),47(CTTTAAAAAGGA,+,0.00) | ||
| + | |transcript_name=KJ902903 | ||
| + | |tss_classification=no | ||
|tss_id=hg_104349.1 | |tss_id=hg_104349.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 17:48, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 24473863 |
|---|---|
| End of the center position in the TSS region: | 24473864 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | KJ902903 |
|---|---|
| Distance: | -464 |
| Num_trans: | 1 |
| All_trans: | KJ902903:-464 |
TATA-Box annotation
| Distance to TSS: | 7333 |
|---|---|
| Nearest PromoterID: | NM_001282770 |
| Entrez ID: | 56243 |
| Nearest Unigene: | Hs.445885 |
| Nearest Refseq: | NM_019590 |
| Nearest Ensembl: | ENSG00000120549 |
| Gene Name: | KIAA1217 |
| Gene Alias: | ETL4|SKT |
| Gene Description: | KIAA1217 |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.58209 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 44(GGCCTTTAAAAA,-,0.00),45(GCCTTTAAAAAG,-,0.00),46(CCTTTAAAAAGG,+,0.00),47(CTTTAAAAAGGA,+,0.00) |
