Difference between revisions of "TSS:Hg 104537.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.01 |distance_to_tss=100421 |entrez_id=57608 |gc_percent=0.542289 |gene_alias=JCAD |gene_description=KIAA1462 |gene_name=KIAA1462 |gene_type=protein-...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |chr=chr10 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance_to_tss= | + | |distance=NA |
| + | |distance_to_tss=100448 | ||
| + | |end=29959140 | ||
| + | |end_of_center_position=29959138 | ||
|entrez_id=57608 | |entrez_id=57608 | ||
|gc_percent=0.542289 | |gc_percent=0.542289 | ||
| − | |gene_alias= | + | |gene_alias=KIAA1462 |
| − | |gene_description= | + | |gene_description=junctional cadherin 5 associated |
| − | |gene_name= | + | |gene_name=JCAD |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000165757 | |nearest_ensembl=ENSG00000165757 | ||
| Line 12: | Line 16: | ||
|nearest_refseq=NM_020848 | |nearest_refseq=NM_020848 | ||
|nearest_unigene=Hs.533953 | |nearest_unigene=Hs.533953 | ||
| − | |tata_box= | + | |num_trans=0 |
| + | |species=human | ||
| + | |start=29959135 | ||
| + | |start_of_center_position=29959137 | ||
| + | |strand=+ | ||
| + | |tata_box=-35(GCCCTTATAAAA,-,0.00),-33(CCTTATAAAAGT,+,0.00) | ||
| + | |transcript_name= | ||
| + | |tss_classification=no | ||
|tss_id=hg_104537.1 | |tss_id=hg_104537.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 17:52, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 29959137 |
|---|---|
| End of the center position in the TSS region: | 29959138 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | 100448 |
|---|---|
| Nearest PromoterID: | NM_020848 |
| Entrez ID: | 57608 |
| Nearest Unigene: | Hs.533953 |
| Nearest Refseq: | NM_020848 |
| Nearest Ensembl: | ENSG00000165757 |
| Gene Name: | JCAD |
| Gene Alias: | KIAA1462 |
| Gene Description: | junctional cadherin 5 associated |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.542289 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -35(GCCCTTATAAAA,-,0.00),-33(CCTTATAAAAGT,+,0.00) |
