Difference between revisions of "TSS:Hg 104872.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.005 |distance_to_tss=-31432 |entrez_id=474354 |gc_percent=0.412935 |gene_alias=UNQ933|UNQ9338|VKGE9338 |gene_description=leucine rich repeat contain...") |
|||
| (3 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |UNQ9338= | ||
| + | |VKGE9338= | ||
| + | |all_trans=HGNC:29323 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| + | |distance=372 | ||
|distance_to_tss=-31432 | |distance_to_tss=-31432 | ||
| + | |end=48945675 | ||
| + | |end_of_center_position=48945667 | ||
|entrez_id=474354 | |entrez_id=474354 | ||
|gc_percent=0.412935 | |gc_percent=0.412935 | ||
| − | |gene_alias=UNQ933 | + | |gene_alias=UNQ933{{!}}UNQ9338{{!}}VKGE9338 |
|gene_description=leucine rich repeat containing 18 | |gene_description=leucine rich repeat containing 18 | ||
| − | |gene_name= | + | |gene_id=57705 |
| + | |gene_name=WDFY family member 4 | ||
| + | |gene_source=HGNC:29323 | ||
| + | |gene_symbol=WDFY4 | ||
| + | |gene_synonyms=Em:AC060234.3 FLJ45748 KIAA1607 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:29323 | ||
|nearest_ensembl=ENSG00000165383 | |nearest_ensembl=ENSG00000165383 | ||
|nearest_promoter_id=NM_001006939 | |nearest_promoter_id=NM_001006939 | ||
|nearest_refseq=NM_001006939 | |nearest_refseq=NM_001006939 | ||
|nearest_unigene=Hs.202438 | |nearest_unigene=Hs.202438 | ||
| − | |tata_box= | + | |num_trans=57705 |
| + | |species=human | ||
| + | |start=48945658 | ||
| + | |start_of_center_position=48945666 | ||
| + | |strand=+ | ||
| + | |tata_box=77(TTCTTTTAAAAG,-,0.00),79(CTTTTAAAAGTG,+,0.00) | ||
| + | |transcript_name=ENST00000465910.5 AK024502 | ||
| + | |tss_classification=no | ||
|tss_id=hg_104872.1 | |tss_id=hg_104872.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 19:19, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 48945666 |
|---|---|
| End of the center position in the TSS region: | 48945667 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000465910.5 AK024502 |
|---|---|
| Distance: | 372 |
| Num_trans: | 57705 |
| All_trans: | HGNC:29323 |
TATA-Box annotation
| Distance to TSS: | -31432 |
|---|---|
| Nearest PromoterID: | NM_001006939 |
| Entrez ID: | 474354 |
| Nearest Unigene: | Hs.202438 |
| Nearest Refseq: | NM_001006939 |
| Nearest Ensembl: | ENSG00000165383 |
| Gene Name: | WDFY family member 4 |
| Gene Alias: | UNQ933|UNQ9338|VKGE9338 |
| Gene Description: | leucine rich repeat containing 18 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.412935 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 77(TTCTTTTAAAAG,-,0.00),79(CTTTTAAAAGTG,+,0.00) |
