Difference between revisions of "TSS:Hg 131283.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=DQ926657:-293 NR_003716:-373 |chr=chr12 |cpg_percent=0.04 |distance=-293 |distance_to_tss=375 |end=53968383 |entrez_id=100124700 |gc_percent=0.552239 |g...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |HOXC-AS4= |
| + | |HOXC11-AS1= | ||
| + | |NCRNA00072= | ||
| + | |all_trans=HGNC:33510 | ||
|chr=chr12 | |chr=chr12 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| Line 6: | Line 9: | ||
|distance_to_tss=375 | |distance_to_tss=375 | ||
|end=53968383 | |end=53968383 | ||
| + | |end_of_center_position=53968381 | ||
|entrez_id=100124700 | |entrez_id=100124700 | ||
|gc_percent=0.552239 | |gc_percent=0.552239 | ||
| − | |gene_alias=HOXAS | + | |gene_alias=HOXAS{{!}}HOXC-AS4{{!}}HOXC11-AS1{{!}}NCRNA00072 |
|gene_description=HOX transcript antisense RNA | |gene_description=HOX transcript antisense RNA | ||
|gene_id=100124700 | |gene_id=100124700 | ||
| Line 21: | Line 25: | ||
|nearest_refseq=NR_003716 | |nearest_refseq=NR_003716 | ||
|nearest_unigene=Hs.197076 | |nearest_unigene=Hs.197076 | ||
| − | |num_trans= | + | |num_trans=100124700 |
|species=human | |species=human | ||
|start=53968378 | |start=53968378 | ||
| + | |start_of_center_position=53968380 | ||
|strand=- | |strand=- | ||
|transcript_name=DQ926657 | |transcript_name=DQ926657 | ||
Latest revision as of 04:53, 20 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 53968380 |
|---|---|
| End of the center position in the TSS region: | 53968381 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | DQ926657 |
|---|---|
| Distance: | -293 |
| Num_trans: | 100124700 |
| All_trans: | HGNC:33510 |
TATA-Box annotation
| Distance to TSS: | 375 |
|---|---|
| Nearest PromoterID: | NR_003716 |
| Entrez ID: | 100124700 |
| Nearest Unigene: | Hs.197076 |
| Nearest Refseq: | NR_003716 |
| Nearest Ensembl: | ENSG00000228630 |
| Gene Name: | HOX transcript antisense RNA |
| Gene Alias: | HOXAS|HOXC-AS4|HOXC11-AS1|NCRNA00072 |
| Gene Description: | HOX transcript antisense RNA |
| Gene Type: | ncRNA |
| CpG%: | 0.04 |
| GC%: | 0.552239 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
