Difference between revisions of "TSS:Hg 105190.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |TRIP-8= | ||
| + | |TRIP8= | ||
| + | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance_to_tss=- | + | |distance=NA |
| + | |distance_to_tss=-414597 | ||
| + | |end=63936499 | ||
| + | |end_of_center_position=63936487 | ||
|entrez_id=221037 | |entrez_id=221037 | ||
|gc_percent=0.467662 | |gc_percent=0.467662 | ||
| − | |gene_alias=KDM3C | + | |gene_alias=KDM3C{{!}}TRIP-8{{!}}TRIP8 |
|gene_description=jumonji domain containing 1C | |gene_description=jumonji domain containing 1C | ||
|gene_name=JMJD1C | |gene_name=JMJD1C | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000171988 | |nearest_ensembl=ENSG00000171988 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001318154 |
|nearest_refseq=NM_004241 | |nearest_refseq=NM_004241 | ||
|nearest_unigene=Hs.413416 | |nearest_unigene=Hs.413416 | ||
| − | |tata_box= | + | |num_trans=0 |
| + | |species=human | ||
| + | |start=63936474 | ||
| + | |start_of_center_position=63936486 | ||
| + | |strand=+ | ||
| + | |tata_box=-97(TGGTATTAAAAG,-,0.00),-81(GGCCTTTAAGAG,-,0.00),-80(GCCTTTAAGAGG,-,0.00),-79(CCTTTAAGAGGT,+,0.00) | ||
| + | |transcript_name= | ||
| + | |tss_classification=no | ||
|tss_id=hg_105190.1 | |tss_id=hg_105190.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 18:08, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 63936486 |
|---|---|
| End of the center position in the TSS region: | 63936487 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | -414597 |
|---|---|
| Nearest PromoterID: | NM_001318154 |
| Entrez ID: | 221037 |
| Nearest Unigene: | Hs.413416 |
| Nearest Refseq: | NM_004241 |
| Nearest Ensembl: | ENSG00000171988 |
| Gene Name: | JMJD1C |
| Gene Alias: | KDM3C|TRIP-8|TRIP8 |
| Gene Description: | jumonji domain containing 1C |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.467662 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -97(TGGTATTAAAAG,-,0.00),-81(GGCCTTTAAGAG,-,0.00),-80(GCCTTTAAGAGG,-,0.00),-79(CCTTTAAGAGGT,+,0.00) |
