Difference between revisions of "TSS:Hg 105390.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0 |distance_to_tss=13729 |entrez_id=4838 |gc_percent=0.432836 |gene_alias=HTX5 |gene_description=nodal growth differentiation factor |gene_name=NODAL...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=DQ585099:105 DQ574698:205 DQ590865:-286 | ||
| + | |chr=chr10 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
| − | |distance_to_tss= | + | |distance=105 |
| + | |distance_to_tss=13701 | ||
| + | |end=70427982 | ||
| + | |end_of_center_position=70427981 | ||
|entrez_id=4838 | |entrez_id=4838 | ||
|gc_percent=0.432836 | |gc_percent=0.432836 | ||
| Line 12: | Line 17: | ||
|nearest_refseq=NM_018055 | |nearest_refseq=NM_018055 | ||
|nearest_unigene=Hs.370414 | |nearest_unigene=Hs.370414 | ||
| − | |tata_box= | + | |num_trans=3 |
| + | |species=human | ||
| + | |start=70427978 | ||
| + | |start_of_center_position=70427980 | ||
| + | |strand=+ | ||
| + | |tata_box=-6(TTTTTTAAAGCC,+,0.00) | ||
| + | |transcript_name=DQ585099 | ||
| + | |tss_classification=no | ||
|tss_id=hg_105390.1 | |tss_id=hg_105390.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 18:13, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 70427980 |
|---|---|
| End of the center position in the TSS region: | 70427981 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | DQ585099 |
|---|---|
| Distance: | 105 |
| Num_trans: | 3 |
| All_trans: | DQ585099:105 DQ574698:205 DQ590865:-286 |
TATA-Box annotation
| Distance to TSS: | 13701 |
|---|---|
| Nearest PromoterID: | NM_018055 |
| Entrez ID: | 4838 |
| Nearest Unigene: | Hs.370414 |
| Nearest Refseq: | NM_018055 |
| Nearest Ensembl: | ENSG00000156574 |
| Gene Name: | NODAL |
| Gene Alias: | HTX5 |
| Gene Description: | nodal growth differentiation factor |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.432836 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -6(TTTTTTAAAGCC,+,0.00) |
