Difference between revisions of "TSS:Hg 10545.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |AB14= | ||
| + | |AB23= | ||
| + | |AD2= | ||
| + | |NBG= | ||
| + | |NBPF= | ||
| + | |all_trans=HGNC:26088 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| + | |distance=0 | ||
|distance_to_tss=46 | |distance_to_tss=46 | ||
| + | |end=16613610 | ||
| + | |end_of_center_position=16613559 | ||
|entrez_id=55672 | |entrez_id=55672 | ||
|gc_percent=0.711443 | |gc_percent=0.711443 | ||
| − | |gene_alias=AB13 | + | |gene_alias=AB13{{!}}AB14{{!}}AB23{{!}}AD2{{!}}NBG{{!}}NBPF |
| − | |gene_description= | + | |gene_description=NBPF member 1 |
| − | |gene_name=NBPF1 | + | |gene_id=55672 |
| + | |gene_name=NBPF member 1 | ||
| + | |gene_source=HGNC:26088 | ||
| + | |gene_symbol=NBPF1 | ||
| + | |gene_synonyms=FLJ20719 KIAA1693 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:26088 | ||
|nearest_ensembl=ENSG00000219481 | |nearest_ensembl=ENSG00000219481 | ||
|nearest_promoter_id=NM_017940 | |nearest_promoter_id=NM_017940 | ||
|nearest_refseq=NM_017940 | |nearest_refseq=NM_017940 | ||
|nearest_unigene=Hs.467587 | |nearest_unigene=Hs.467587 | ||
| − | |tata_box= | + | |num_trans=55672 |
| + | |species=human | ||
| + | |start=16613507 | ||
| + | |start_of_center_position=16613558 | ||
| + | |strand=- | ||
| + | |tata_box=-83(GTCCCTTTAAGG,-,0.00),-81(CCCTTTAAGGCC,+,0.00),-80(CCTTTAAGGCCC,+,0.00) | ||
| + | |transcript_name=ENST00000599069.5 ENST00000449853.2 BC093404 BC110431 AK055895 BC066930 BC010124 BC082236 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_10545.1 | |tss_id=hg_10545.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q3BBV0 | ||
}} | }} | ||
Latest revision as of 19:31, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 16613558 |
|---|---|
| End of the center position in the TSS region: | 16613559 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000599069.5 ENST00000449853.2 BC093404 BC110431 AK055895 BC066930 BC010124 BC082236 |
|---|---|
| Distance: | 0 |
| Num_trans: | 55672 |
| All_trans: | HGNC:26088 |
TATA-Box annotation
| Distance to TSS: | 46 |
|---|---|
| Nearest PromoterID: | NM_017940 |
| Entrez ID: | 55672 |
| Nearest Unigene: | Hs.467587 |
| Nearest Refseq: | NM_017940 |
| Nearest Ensembl: | ENSG00000219481 |
| Gene Name: | NBPF member 1 |
| Gene Alias: | AB13|AB14|AB23|AD2|NBG|NBPF |
| Gene Description: | NBPF member 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.711443 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -83(GTCCCTTTAAGG,-,0.00),-81(CCCTTTAAGGCC,+,0.00),-80(CCTTTAAGGCCC,+,0.00) |
