Difference between revisions of "TSS:Hg 105577.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.005 |distance_to_tss=54644 |entrez_id=7414 |gc_percent=0.318408 |gene_alias=CMD1W|CMH15|HEL114|MV|MVCL |gene_description=vinculin |gene_name=VCL |ge...") |
|||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |CMH15= | ||
| + | |HEL114= | ||
| + | |MV= | ||
| + | |MVCL= | ||
| + | |chr=chr10 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance_to_tss= | + | |distance=NA |
| + | |distance_to_tss=54642 | ||
| + | |end=74052759 | ||
| + | |end_of_center_position=74052758 | ||
|entrez_id=7414 | |entrez_id=7414 | ||
|gc_percent=0.318408 | |gc_percent=0.318408 | ||
| − | |gene_alias=CMD1W | + | |gene_alias=CMD1W{{!}}CMH15{{!}}HEL114{{!}}MV{{!}}MVCL |
|gene_description=vinculin | |gene_description=vinculin | ||
|gene_name=VCL | |gene_name=VCL | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000035403 | |nearest_ensembl=ENSG00000035403 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_003373 |
|nearest_refseq=NM_003373 | |nearest_refseq=NM_003373 | ||
|nearest_unigene=Hs.643896 | |nearest_unigene=Hs.643896 | ||
| − | |tata_box= | + | |num_trans=0 |
| + | |species=human | ||
| + | |start=74052756 | ||
| + | |start_of_center_position=74052757 | ||
| + | |strand=+ | ||
| + | |tata_box=-74(TACTTTTTAAGC,-,0.00) | ||
| + | |transcript_name= | ||
| + | |tss_classification=no | ||
|tss_id=hg_105577.1 | |tss_id=hg_105577.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 18:17, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 74052757 |
|---|---|
| End of the center position in the TSS region: | 74052758 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | 54642 |
|---|---|
| Nearest PromoterID: | NM_003373 |
| Entrez ID: | 7414 |
| Nearest Unigene: | Hs.643896 |
| Nearest Refseq: | NM_003373 |
| Nearest Ensembl: | ENSG00000035403 |
| Gene Name: | VCL |
| Gene Alias: | CMD1W|CMH15|HEL114|MV|MVCL |
| Gene Description: | vinculin |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.318408 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -74(TACTTTTTAAGC,-,0.00) |
