Difference between revisions of "TSS:Hg 105886.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=LF334031:-21 MA569608:-21 LF334032:-111 MA569609:-111 LF334033:-303 MA569610:-303 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance_to_tss= | + | |distance=-21 |
| − | |entrez_id= | + | |distance_to_tss=16414 |
| + | |end=80519530 | ||
| + | |end_of_center_position=80519529 | ||
| + | |entrez_id=101929574 | ||
|gc_percent=0.368159 | |gc_percent=0.368159 | ||
|gene_alias=- | |gene_alias=- | ||
| − | |gene_description=uncharacterized | + | |gene_description=uncharacterized LOC101929574 |
| − | |gene_name= | + | |gene_name=LOC101929574 |
|gene_type=ncRNA | |gene_type=ncRNA | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000226659 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_120661 |
| − | |nearest_refseq= | + | |nearest_refseq=NR_120661 |
| − | |nearest_unigene=Hs. | + | |nearest_unigene=Hs.593663 |
| − | |tata_box= | + | |num_trans=6 |
| + | |species=human | ||
| + | |start=80519526 | ||
| + | |start_of_center_position=80519528 | ||
| + | |strand=+ | ||
| + | |tata_box=75(TCTTTTATGGAA,+,0.00) | ||
| + | |transcript_name=LF334031 MA569608 | ||
| + | |tss_classification=no | ||
|tss_id=hg_105886.1 | |tss_id=hg_105886.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 18:24, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 80519528 |
|---|---|
| End of the center position in the TSS region: | 80519529 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | LF334031 MA569608 |
|---|---|
| Distance: | -21 |
| Num_trans: | 6 |
| All_trans: | LF334031:-21 MA569608:-21 LF334032:-111 MA569609:-111 LF334033:-303 MA569610:-303 |
TATA-Box annotation
| Distance to TSS: | 16414 |
|---|---|
| Nearest PromoterID: | NR_120661 |
| Entrez ID: | 101929574 |
| Nearest Unigene: | Hs.593663 |
| Nearest Refseq: | NR_120661 |
| Nearest Ensembl: | ENSG00000226659 |
| Gene Name: | LOC101929574 |
| Gene Alias: | - |
| Gene Description: | uncharacterized LOC101929574 |
| Gene Type: | ncRNA |
| CpG%: | 0.015 |
| GC%: | 0.368159 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 75(TCTTTTATGGAA,+,0.00) |
