Difference between revisions of "Template:GenePage"
From referenceTSS
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</style> | </style> | ||
</html> | </html> | ||
| + | <span class="section_head">Relatad TSS IDs</span> | ||
| + | <hr width="270px" size="2" align="left" noshade> | ||
| + | {{#ask: [[TSS:+]][[gene_id::{{{gene_id|}}}]] | ||
| + | |format=table | ||
| + | |default="No query result." | ||
| + | |headers=hide | ||
| + | |link=all | ||
| + | |searchlabel=... further results | ||
| + | |class=sortable wikitable smwtable | ||
| + | }} | ||
| + | <br> | ||
<span class="section_head">Basic information</span> | <span class="section_head">Basic information</span> | ||
<hr width="270px" size="2" align="left" noshade> | <hr width="270px" size="2" align="left" noshade> | ||
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<table class="inner" > | <table class="inner" > | ||
<tr><th scope="row" align="left">HGNC/MGI_ID:</th><td>{{#ifeq:{{{species}}}|human|<html><a href="http://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=</html>{{{hgnc_mgi_id}}}<html>"></html>|<html><a href="http://www.informatics.jax.org/marker/</html>{{{hgnc_mgi_id}}}<html>"></html>}}{{{hgnc_mgi_id}}}<html></a></html></td></tr> | <tr><th scope="row" align="left">HGNC/MGI_ID:</th><td>{{#ifeq:{{{species}}}|human|<html><a href="http://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=</html>{{{hgnc_mgi_id}}}<html>"></html>|<html><a href="http://www.informatics.jax.org/marker/</html>{{{hgnc_mgi_id}}}<html>"></html>}}{{{hgnc_mgi_id}}}<html></a></html></td></tr> | ||
| − | <tr><th scope="row" align="left">Ensembl:</th><td>{{#if:{{{ensembl}}}|<html><a href="http://www.ensembl.org/id/</html>{{{ensembl}}}<html>"></html>{{{ensembl}}}<html></a></html>|}}</td></tr> | + | <tr><th scope="row" align="left">Ensembl:</th><td>{{#if:{{{ensembl}}}|<html><a href="http://www.ensembl.org/id/</html>{{#replace:{{{ensembl}}}|Ensembl:|}}<html>"></html>{{{ensembl}}}<html></a></html>|}}</td></tr> |
<tr><th scope="row" align="left">Vega:</th><td>{{#if:{{{vega}}}|<html><a href="http://vega.sanger.ac.uk/id/</html>{{#replace:{{{vega}}}|Vega:|}}<html>"></html>{{{vega}}}<html></a></html>|}}</td></tr> | <tr><th scope="row" align="left">Vega:</th><td>{{#if:{{{vega}}}|<html><a href="http://vega.sanger.ac.uk/id/</html>{{#replace:{{{vega}}}|Vega:|}}<html>"></html>{{{vega}}}<html></a></html>|}}</td></tr> | ||
<tr><th scope="row" align="left">HPRD:</th><td>{{{hprd|}}}</td></tr> | <tr><th scope="row" align="left">HPRD:</th><td>{{{hprd|}}}</td></tr> | ||
<tr><th scope="row" align="left">miRBase:</th><td>{{#if:{{{mirbase}}}|<html><a href="http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=</html>{{#replace:{{{mirbase}}}|miRBase:|}}<html>"></html>{{{mirbase}}}<html></a></html>|}}</td></tr> | <tr><th scope="row" align="left">miRBase:</th><td>{{#if:{{{mirbase}}}|<html><a href="http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=</html>{{#replace:{{{mirbase}}}|miRBase:|}}<html>"></html>{{{mirbase}}}<html></a></html>|}}</td></tr> | ||
<tr><th scope="row" align="left">IMGT/GENE-DB:</th><td>{{#if:{{{imgt_gene-db}}}|<html><a href="http://www.imgt.org/IMGT_GENE-DB/GENElect?species=Homo+sapiens&query=2+</html>{{#replace:{{{imgt_gene-db}}}|IMGT/GENE-DB:|}}<html>"></html>{{{imgt_gene-db}}}<html></a></html>|}}</td></tr> | <tr><th scope="row" align="left">IMGT/GENE-DB:</th><td>{{#if:{{{imgt_gene-db}}}|<html><a href="http://www.imgt.org/IMGT_GENE-DB/GENElect?species=Homo+sapiens&query=2+</html>{{#replace:{{{imgt_gene-db}}}|IMGT/GENE-DB:|}}<html>"></html>{{{imgt_gene-db}}}<html></a></html>|}}</td></tr> | ||
| − | <tr><th scope="row" align="left">MIM:</th><td>{{#if:{{{mim}}}|<html><a href="https://www.ncbi.nlm.nih.gov/omim/</html>{{#replace:{{{mim}}}|MIM:|}}<html>"></html>{{{mim}}}<html></a></html>|}}</td></tr> | + | <tr><th scope="row" align="left">MIM:</th><td>{{#if:{{{mim}}}|<html><a href="https://www.ncbi.nlm.nih.gov/omim/</html>{{#replace:{{#replace:{{{mim}}}|MIM:|}}|MGI:MGI:|}}<html>"></html>{{{mim}}}<html></a></html>|}}</td></tr> |
</table> | </table> | ||
<br> | <br> | ||
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<table class="inner" > | <table class="inner" > | ||
<tr><th scope="row" align="left">Gencode transcripts:</th><td>{{#if:{{{gencode_transcripts}}}|{{#replace:{{{gencode_transcripts}}}| |<br>}}|}}</td></tr> | <tr><th scope="row" align="left">Gencode transcripts:</th><td>{{#if:{{{gencode_transcripts}}}|{{#replace:{{{gencode_transcripts}}}| |<br>}}|}}</td></tr> | ||
| − | <tr><th scope="row" align="left">RefSeq transcripts:</th><td>{{#if:{{{refSeq_transcripts}}}|{{#arraydefine:arrayr|{{{refSeq_transcripts}}}| }}{{#arrayprint:arrayr| |@|<html><a href="https://www.ncbi.nlm.nih.gov/nuccore/</html> | + | <tr><th scope="row" align="left">RefSeq transcripts:</th><td>{{#if:{{{refSeq_transcripts}}}|{{#arraydefine:arrayr|{{#replace:{{{refSeq_transcripts}}}| |;}}|;}}{{#arrayprint:arrayr| |@|<html><a href="https://www.ncbi.nlm.nih.gov/nuccore/</html>@<html>"></html>@<html></a></html>}}|}}</td></tr> |
| − | <tr><th scope="row" align="left">UCSC genes:</th><td>{{#if:{{{ucsc_genes}}}|{{#arraydefine:arrayu|{{{ucsc_genes}}}| }}{{#arrayprint:arrayu| |@|<html><a href="http://genome.ucsc.edu/cgi-bin/hgTracks?position=</html> | + | <tr><th scope="row" align="left">UCSC genes:</th><td>{{#if:{{{ucsc_genes}}}|{{#arraydefine:arrayu|{{#replace:{{{ucsc_genes}}}| |;}}|;}}{{#arrayprint:arrayu||@|<html><a href="http://genome.ucsc.edu/cgi-bin/hgTracks?position=</html>@<html>"></html>@<html></a><br></html>}}|}}</td></tr> |
| − | <tr><th scope="row" align="left">Other_mRNAs:</th><td>{{#if:{{{other_mrnas}}}|{{#replace:{{{other_mrnas}}}| |<br>}}|}}</td></tr> | + | <tr><th scope="row" align="left">Other_mRNAs:</th><td>{{#if:{{{other_mrnas}}}|{{#arraydefine:arrayo|{{#replace:{{{other_mrnas}}}| |;}}|;}}{{#arrayprint:arrayo||@|<html><a href="https://www.ncbi.nlm.nih.gov/nuccore/</html>@<html>"></html>@<html></a><br></html>}}|}}</td></tr> |
</table> | </table> | ||
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{{#set:gene_symbol={{{gene_symbol|}}}}} | {{#set:gene_symbol={{{gene_symbol|}}}}} | ||
Latest revision as of 18:26, 21 June 2018
Relatad TSS IDs
"No query result."Some use of "" in your query was not closed by a matching "".
Basic information
| GeneID: | {{{gene_id}}} |
|---|---|
| Species: | {{{species}}} |
| Gene name: | {{{gene_name}}} |
| Gene symbol: | {{{gene_symbol}}} |
| Gene synonyms: | {{{gene_synonyms}}} |
| Gene type: | {{{gene_type}}} |
| Old GeneIDs: | {{{old_gene_ids}}} |
Links to external databases
| HGNC/MGI_ID: | {{{hgnc_mgi_id}}} |
|---|---|
| Ensembl: | {{{ensembl}}} |
| Vega: | {{{vega}}} |
| HPRD: | |
| miRBase: | {{{mirbase}}} |
| IMGT/GENE-DB: | {{{imgt_gene-db}}} |
| MIM: | {{{mim}}} |
Transcripts
| Gencode transcripts: | {{{gencode_transcripts}}} |
|---|---|
| RefSeq transcripts: | Template:(({refSeq_transcriptsTemplate:))}">Template:(({refSeq_transcriptsTemplate:))} |
| UCSC genes: | Template:(({ucsc_genesTemplate:))}">Template:(({ucsc_genesTemplate:))} |
| Other_mRNAs: | Template:(({other_mrnasTemplate:))}">Template:(({other_mrnasTemplate:))} |
