Difference between revisions of "TSS:Hg 10121.1"
From referenceTSS
| (One intermediate revision by the same user not shown) | |||
| Line 4: | Line 4: | ||
|DNB1= | |DNB1= | ||
|NEDBEH= | |NEDBEH= | ||
| − | |all_trans=ENST00000465125.1:-233 | + | |all_trans=NM_001042682:116 ENST00000465125.1:-233 ENST00000476556.5:282 ENST00000492766.5:282 AF016005:282 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| − | |distance= | + | |distance=116 |
| − | |distance_to_tss=- | + | |distance_to_tss=-142 |
|end=8424001 | |end=8424001 | ||
|end_of_center_position=8423975 | |end_of_center_position=8423975 | ||
|entrez_id=473 | |entrez_id=473 | ||
|gc_percent=0.726368 | |gc_percent=0.726368 | ||
| − | |gene_alias=ARG | + | |gene_alias=ARG{{!}}ARP{{!}}ATN1L{{!}}DNB1{{!}}NEDBEH |
|gene_description=arginine-glutamic acid dipeptide repeats | |gene_description=arginine-glutamic acid dipeptide repeats | ||
|gene_id=473 | |gene_id=473 | ||
| − | |gene_name=arginine-glutamic acid dipeptide | + | |gene_name=arginine-glutamic acid dipeptide repeats |
|gene_source=HGNC:9965 | |gene_source=HGNC:9965 | ||
|gene_symbol=RERE | |gene_symbol=RERE | ||
| − | |gene_synonyms=ARG ARP DNB1 KIAA0458 | + | |gene_synonyms=ARG ARP ATN2 DNB1 KIAA0458 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:9965 | |hgnc_mgi_id=HGNC:9965 | ||
| Line 26: | Line 26: | ||
|nearest_refseq=NM_012102 | |nearest_refseq=NM_012102 | ||
|nearest_unigene=Hs.463041 | |nearest_unigene=Hs.463041 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=human | |species=human | ||
|start=8423947 | |start=8423947 | ||
|start_of_center_position=8423974 | |start_of_center_position=8423974 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=NM_001042682.2 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_10121.1 | |tss_id=hg_10121.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q9P2R6 |
}} | }} | ||
Latest revision as of 18:00, 19 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 8423974 |
|---|---|
| End of the center position in the TSS region: | 8423975 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_001042682.2 |
|---|---|
| Distance: | 116 |
| Num_trans: | 5 |
| All_trans: | NM_001042682:116 ENST00000465125.1:-233 ENST00000476556.5:282 ENST00000492766.5:282 AF016005:282 |
TATA-Box annotation
| Distance to TSS: | -142 |
|---|---|
| Nearest PromoterID: | NM_001042682 |
| Entrez ID: | 473 |
| Nearest Unigene: | Hs.463041 |
| Nearest Refseq: | NM_012102 |
| Nearest Ensembl: | ENSG00000142599 |
| Gene Name: | arginine-glutamic acid dipeptide repeats |
| Gene Alias: | ARG|ARP|ATN1L|DNB1|NEDBEH |
| Gene Description: | arginine-glutamic acid dipeptide repeats |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.726368 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
